Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37720 214 / 8e-69 DIP2, ALY4 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) AT1G66260 207 / 9e-66 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G59950 150 / 1e-44 RNA-binding (RRM/RBD/RNP motifs) family protein AT5G02530 152 / 2e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G10400 60 / 2e-10 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT2G23350 59 / 9e-10 PABP4, PAB4 poly(A) binding protein 4 (.1) AT2G37220 51 / 3e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G44200 50 / 4e-07 ATCBP20, CBP20 CAP-binding protein 20 (.1.2) AT2G16940 50 / 7e-07 Splicing factor, CC1-like (.1.2.3) AT1G71770 50 / 9e-07 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129900 [exp] 317 / 5e-109 AT1G66260 216 / 3e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G093944 [exp] 155 / 2e-46 AT5G59950 196 / 1e-62 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G236900 [exp] 149 / 4e-44 AT5G59950 187 / 2e-59 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.010G208000 [exp] 123 / 9e-34 AT5G59950 138 / 8e-40 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.008G052601 [exp] 92 / 7e-23 AT5G02530 97 / 2e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G227500 [exp] 59 / 4e-10 AT3G10400 223 / 7e-73 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Potri.007G137400 [exp] 54 / 2e-08 AT5G44200 327 / 9e-114 CAP-binding protein 20 (.1.2) Potri.017G014600 [exp] 54 / 3e-08 AT5G44200 331 / 2e-115 CAP-binding protein 20 (.1.2) Potri.001G141300 [exp] 53 / 6e-08 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000446 [exp] 259 / 5e-86 AT5G37720 211 / 1e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Lus10010982 [exp] 259 / 9e-86 AT5G37720 209 / 7e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Lus10024413 [exp] 147 / 4e-43 AT5G59950 219 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10025329 [exp] 147 / 4e-43 AT5G59950 224 / 2e-73 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10005895 [exp] 147 / 7e-43 AT5G02530 185 / 8e-58 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10004946 [exp] 144 / 1e-41 AT5G59950 209 / 3e-67 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10005445 [exp] 144 / 2e-41 AT5G59950 210 / 9e-68 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10023417 [exp] 117 / 3e-31 AT5G59950 130 / 3e-37 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10040851 [exp] 94 / 7e-22 AT5G02530 199 / 2e-64 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10040299 [exp] 64 / 2e-11 AT5G59950 77 / 1e-16 RNA-binding (RRM/RBD/RNP motifs) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.004G087000.1 pacid=42796617 polypeptide=Potri.004G087000.1.p locus=Potri.004G087000 ID=Potri.004G087000.1.v4.1 annot-version=v4.1 ATGGCTACAACTGTGGACATGTCTCTTGATGACATTATAAAGAAAAACAGAGAGAGAGGTAGAGGACGAGGCAGGGCCAGTCGTGGCCGTGATCGTGGAC CTGGTAGGTTCTTTAATAATGGAAGGATGTCAGGGGCGGTTCGTAGAGGCCCTCTCTCAGTGAATGCTCGGCCACCAAAATACTCAATTGCCAAGCCTTC CCGCCGAATTAGGAGTCTGCCCTGGCAGCATGATTTGCTTGAGGATAGCATTAGAGCTGCAGGGATAACAGGATTAGAAGTTGGAACCAAGTTATATGTT TCAAACTTGGATTATGGCGTGACCAATGAAGACATAAGGGAGCTCTTTGCAGAGATTGGAGACTTGAAACGATTTGCTGTTCACTATGACAAAAATGGTC GCTCTACTGGCTCAGCTGAAGTTATGTATACCAGAAGAAGTGATGCGTTTTCTGCTCTTAAGAAGTATAACAATGTACTTTTAGATGGAAGGCCTATGAA GATTGAGATTGTGGGTGCCAATCCAGAGGTGCCTATTTCAGCTCGAGTGAATGTTACTGGAGCAAATGGAAAGAAGAAGAGAACTGTTGTTATGATGCCT GGACCAGGTCGTGGAAGAGGTGGTGTTGTGAATAATCATGGTTCTGGTCAGAGCCGTCGTGGGGGTGGGGGTCCAAGGAATGGTATGAGAAATGGCCGTG GTCGCGGTCGTGCTCAGGGTCAGGGTCGAGGCCGAGGCCGTGGGAAGAAACAACCTGCTGAGAAGTCAGTAGATGACCTGGATAAGGAATTGGAAAGTTA TCATGCTGAAGCCATGCAAACTTAA
AA sequence Show only first row Show all	>Potri.004G087000.1 pacid=42796617 polypeptide=Potri.004G087000.1.p locus=Potri.004G087000 ID=Potri.004G087000.1.v4.1 annot-version=v4.1 MATTVDMSLDDIIKKNRERGRGRGRASRGRDRGPGRFFNNGRMSGAVRRGPLSVNARPPKYSIAKPSRRIRSLPWQHDLLEDSIRAAGITGLEVGTKLYV SNLDYGVTNEDIRELFAEIGDLKRFAVHYDKNGRSTGSAEVMYTRRSDAFSALKKYNNVLLDGRPMKIEIVGANPEVPISARVNVTGANGKKKRTVVMMP GPGRGRGGVVNNHGSGQSRRGGGGPRNGMRNGRGRGRAQGQGRGRGRGKKQPAEKSVDDLDKELESYHAEAMQT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37720		DIP2, ALY4	interacting with DNA-binding d...		Potri.004G087000 [exp]	0	1
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.001G138900 [exp]	18.16	0.7887
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Potri.012G080800 [exp]	18.49	0.7797
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Potri.019G126500 [exp]	22.53	0.7778
AT3G48810			Pentatricopeptide repeat (PPR)...		Potri.008G102100 [exp]	26.92	0.7355
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Potri.007G052800 [exp]	38.18	0.7639
AT4G03030			Galactose oxidase/kelch repeat...		Potri.005G221300 [exp]	45.67	0.7667
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Potri.008G052801 [exp]	48.61	0.7519
AT1G17370		UBP1B	oligouridylate binding protein...		Potri.003G069000 [exp]	49.43	0.7171
					Potri.010G065733 [exp]	57.00	0.7566
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Potri.003G181900 [exp]	58.68	0.7216

Compare expression of checked genes

Potri.004G087000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.