Plant FIBer expression Database

Potri.004G087100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16620 399 / 3e-136 PDE120, TIC40, ATTIC40 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G129800
[exp]
620 / 0 AT5G16620 357 / 6e-120 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002287
[exp]
404 / 3e-138 AT5G16620 330 / 2e-109 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1)
Lus10004053
[exp]
320 / 2e-105 AT5G16620 257 / 9e-81 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence
>Potri.004G087100.1 pacid=42795297 polypeptide=Potri.004G087100.1.p locus=Potri.004G087100 ID=Potri.004G087100.1.v4.1 annot-version=v4.1
ATGGAAAACCCTAGATTAGCCCTACTTTCTTCTTCTTCCCCAAAATTAGTTATGGGATACCCAACTTCTCTCAAAAACCCTACCACCCCTAAATTCTCCA
TATCCACAACCAGGCCCTCTCTTCCTTTCTCTCTCAGAATTTCCAAAACTGCCCCTCATGCTTCAATATTTTCCATTTCTGCCCTTGCCAACTCTCATGG
TCACCGTAGAACCTCCAAAAATGGGAAATTAGGGAGTGAATATTTTGCTAGCATTTCTTCATCTAGTGGAAAACAAACAGCTTCTGTAGGAGTTAATCCT
CAGCCAGTGTCGCCACCTCCTTCGCAAATAGGATCACCGCTGTTTTGGGTTGGAGTTGGTGTTGGGTTATCAGCAATTTTTTCATGGGTGGCTACCAGGG
TAAAGAATTATGCCATGCAACAAGCTTTCAAATCTTTGACAGAACAGATGAATACACAAAATAACCAATTCAATCCTGCATTTTCTGCAAGGCCACCTTT
TCCATTTTCTCCGCCACCAGCATCACACCCTTCAACCTCACCTTCTCCAGCTGCTTCTCAACCTGCAATCACAGTAGACATCCCTGCTACAAAAGTAGAA
GCAGCTCCAACCACTGATGTTGGAAAGGAAAAGGAGACTGATTTTCTAGAGGAAAGGAAGATAAAGGAGGAGACAAAGAAATATGCTTTTGTGGACATTT
CTCCTGAAGAAACCTCGCTGAATACTCCCTTTTCAAGTGTTGAAGATGACAACGAAACAAGCTCATCCAAGGATGTTGAGTTTGCCAAGAAAGTCTTTCA
AAATGGAGCTGCCTTTAAGCAGGGCCCAGGTGCTGCCGAGGGTTCTCAATCTACTCCAGGACCTTTCTTATCCGTGGAAGCTTTGGAGAAAATGATGGAA
GATCCAACAATGCAAAAGATGGTTTATCCGTACTTACCTGAGGAGATGAGGAACCCTACCACCTTCAAATGGATGCTACAAAATCCACAATACCGTCAGC
AACTGGAAGACATGCTAAATAATATGGGTGGAAGTGGTAAATGGGACAGCCAGATGATGGATTCTTTGAAAGATTTTGATCTCAACAGTGCTGAGGTTAA
GCAGCAGTTTGATCAAATTGGCCTTACACCTGAGGAAGTAATTTCAAAAATCATGGCCAATCCTGATGTTGCCATGGCATTTCAAAATCCAAGAGTTCAA
CAAGCCATAATGGAGTGTTCACAGAACCCAATTAACATTACCAAATATCAGAATGACAAGGAGGTTATGGATGTCTTCAACAAAATATCAGAGCTCTTCC
CTGGGATGACTGGCTGA
AA sequence
>Potri.004G087100.1 pacid=42795297 polypeptide=Potri.004G087100.1.p locus=Potri.004G087100 ID=Potri.004G087100.1.v4.1 annot-version=v4.1
MENPRLALLSSSSPKLVMGYPTSLKNPTTPKFSISTTRPSLPFSLRISKTAPHASIFSISALANSHGHRRTSKNGKLGSEYFASISSSSGKQTASVGVNP
QPVSPPPSQIGSPLFWVGVGVGLSAIFSWVATRVKNYAMQQAFKSLTEQMNTQNNQFNPAFSARPPFPFSPPPASHPSTSPSPAASQPAITVDIPATKVE
AAPTTDVGKEKETDFLEERKIKEETKKYAFVDISPEETSLNTPFSSVEDDNETSSSKDVEFAKKVFQNGAAFKQGPGAAEGSQSTPGPFLSVEALEKMME
DPTMQKMVYPYLPEEMRNPTTFKWMLQNPQYRQQLEDMLNNMGGSGKWDSQMMDSLKDFDLNSAEVKQQFDQIGLTPEEVISKIMANPDVAMAFQNPRVQ
QAIMECSQNPINITKYQNDKEVMDVFNKISELFPGMTG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G16620 PDE120, TIC40, ... pigment defective embryo 120, ... Potri.004G087100
[exp]
0 1
AT4G37510 Ribonuclease III family protei... Potri.007G053000
[exp]
3.00 0.9739
AT3G53900 UPP, PYRR PYRIMIDINE R, uracil phosphori... Potri.006G091000
[exp]
3.87 0.9610
AT4G09040 RNA-binding (RRM/RBD/RNP motif... Potri.005G161000
[exp]
4.89 0.9725
AT1G32500 ABCI7, ATNAP6 ATP-binding cassette I7, non-i... Potri.003G089700
[exp]
7.41 0.9636
AT3G58830 haloacid dehalogenase (HAD) su... Potri.002G060600
[exp]
7.54 0.9715
AT5G01590 unknown protein Potri.016G123900
[exp]
9.21 0.9599
AT3G08740 elongation factor P (EF-P) fam... Potri.016G136600
[exp]
10.77 0.9706
AT1G06190 Rho termination factor (.1.2) Potri.002G037800
[exp]
11.83 0.9636
AT1G80480 PTAC17 plastid transcriptionally acti... Potri.003G030100
[exp]
13.41 0.9698
AT3G52380 CP33, PDE322 PIGMENT DEFECTIVE 322, chlorop... Potri.016G068300
[exp]
16.73 0.9673 CP33.2

Potri.004G087100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.