Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16630 786 / 0 ATRAD4 DNA repair protein Rad4 family (.1.2) AT5G49570 44 / 0.0006 ATPNG1 peptide-N-glycanase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G039600 [exp] 47 / 0.0001 AT5G49570 834 / 0.0 peptide-N-glycanase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004055 [exp] 992 / 0 AT5G16630 771 / 0.0 DNA repair protein Rad4 family (.1.2) Lus10002285 [exp] 852 / 0 AT5G16630 668 / 0.0 DNA repair protein Rad4 family (.1.2) Lus10000108 [exp] 99 / 2e-23 AT5G16630 66 / 5e-13 DNA repair protein Rad4 family (.1.2) Lus10009734 [exp] 53 / 2e-07 AT5G16630 49 / 1e-06 DNA repair protein Rad4 family (.1.2) Lus10009179 [exp] 45 / 0.0002 AT5G49570 817 / 0.0 peptide-N-glycanase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF03835 [poplar] [flax] Rad4 Rad4 transglutaminase-like domain CL0125 [poplar] [flax] PF10403 [poplar] [flax] BHD_1 Rad4 beta-hairpin domain 1 CL0125 [poplar] [flax] PF10404 [poplar] [flax] BHD_2 Rad4 beta-hairpin domain 2 CL0123 [poplar] [flax] HTH PF10405 [poplar] [flax] BHD_3 Rad4 beta-hairpin domain 3
Representative CDS sequence Show only first row Show all	>Potri.004G087400.2 pacid=42794782 polypeptide=Potri.004G087400.2.p locus=Potri.004G087400 ID=Potri.004G087400.2.v4.1 annot-version=v4.1 ATGCGTACAAGAAGCAACAACAAACAATCTTCAGGGAAGGAGAGTACAGTGAGTGCTATACGTGATGTGGATAGTGAAAGTCTAGCTGACATGTCAAATG AGGCAGTGGATAAGCTTGTAAGACGTGTGAAGGGGCGGGGATCATCTGGGAAGAAGAAACAAGATAATCGGCTGCAATGTGATTCTGCTGCCACTGGTGA GAATGGGCTAAAAAGTAATGGAAAACAAGTTGTAGATGCAAGAGTTACTTGGAATGACTTGGATGCTCGGGGTCTTGCTCAAGATCCTGCCGCAAATGAC ACTAGAGAAGTTGAAGGGGGAGGTTTTCAGACTACTTTTCAGGAGAGTGATCAAGAGATGGATGACATAGATTGGGAAGATGGTTCGTCTTCCATACTGG GTCATGTAAAAAATCATCCAGGTGATGGCATTAGGGAGGTTACTATTGAATTCAGTGAGTCGCCTGACTCTGCTAAACGGAAGCCCATTCGTCGAGCTAC TGCTGAAGAAAAGGGATTGGCTGAGCTTGTGCATAAGGTTCACCTGCTTTGTTTACTTGCAAGGGGCAGAATAATTGATCATGCTTGTGATGATCCTCTC ATTCAGGCCTCTTTACTTTCTATTCTACCGGCGCATTTGTCGAATACATTAGGGGACCCTAAACTTCATGCTAAGGCTTTATCTCCTCTTGCCCATTGGT TTCATAATAACTTTCATGTTGCAAGTTCAGTCAGTGAAAAGAGATCATTTCATTCTGCTTTGTCATGTGCTCTTGAAACTCGTGAAGGGACTCTAGAGGA GCTTGCAGCGTTATCTGTGGCACTATTTAGAGCTTTGAAGCTCACAACCCGATTTGTATCCATCCTTGATGTTGCTTCCATAAAACCTGATGCTGACAAA TACGAGTCCTTGAGTCAAGGTACAAGTAAAATGCATAGGGGAATATTCAACACTTCAACACTGATGGTGGATAGACCGAAAGAGGTTTTCATACCTCCTA AATCTCTCTCATGTAATGAGAAAAAAAATGTTGCCGAAACCTCATCAAAGACTTCATGCAAAAGTAAAGATAACTGTTCAAGGAGCAAGAAAATTCAATC TAATGATTCTCCTCCTGCTGTTGAACTAAAAGATAAGATGGTAGATACATTTCCATGTGAGGCACAAAATAACACTTCTGAGGAATGTGTTACCAAGAAA TCTCAGGGTTCAAAGAGGAAAGGTGATCTTGAGTTTGAGATGCAGTTGCAAATGGCCATGTCTGCAACAGCAGTTGCAACTCAAAGTAACAAAGAATTGG ATGTAAAAGAATCAAGTAATTCATCTGATGTCTCTTCTCCATTTAAAAGAATCAGAAAAATTGCAAATGAAGAATCTTCCTCTCAGGGAATCTCGACTGC TCTTGGATCCAGAAAAATAGGATCTCCTCTTTATTGGGCAGAAGTATACTGCAGTGGAGAAAATCTGACAGGAAAGTGGGTGCATGTGGATGCTGTACAT GATATTGTAGATGGAGAGCAGAAGGTGGAAGCTGCAGCTGATGCTTGCAAAACATCTCTGAGATATGTAGTTGCTTTTGCTGGGCTTGGGGCTAAAGATG TGACTCGCAGGTACTGTATGAAGTGGTACAAGATAGCATCACAAAGAGTTAACTCGCTTTGGTGGGATGCAGTATTGGCCCCACTGAGAGAGTTAGAGTC AGGAGCAACTGGAGGTATGGCACATTTGGAAAAGCCCCATGCTGATGCCTCAAATGAACATGAAAATGTAATAGCATCAGGATTGTCTGATCTTCCAATG CCGAATGAACTTCCAAGCAATGTTGACTTGCCCAAAGAATCTGGGAGGAAGAATGATGTAGAATCTTCTGGCAGGAATTCTTTTGCTGCTACTAGAAACA CTATTGAGGATATGGAATTGCAAACTAGGGCACTAACTGAGCCTCTTCCCACTAATCAGCAGGCATACAAAAATCATTTGCTATATGCAATTGAAAAATG GCTTACAAAGTGTCAAATACTTCATCCTAAGGGTCCTATTCTGGGATTTTGTTCTGGACACCCTGTTTATCCTCGTGCTTGTGTACAGACACTCAGAACA AAAGAGAGATGGCTGCGTGAAGGGCTGCAAGTTAAAGTAAAGGAACTTCCAGCTAAGGTAGTGAAACAATCTGGAAAGCTTAAGAAAGTGCAATTTTCCG AAGATGATGATTATGGTGAGACTGATTCCGGAGTTGTTGAACTTTATGGAATGTGGCAGCTAGAACCCTTGCAACTTCCCCATGCTGTAAATGGGATTGT TCCAAAGAATGAACGAGGTCAAGTTGATGTGTGGTCTGAGAAATGCCTGCCACCAGGGACTGTGCACTTAAGATTGCCAAGGGTATTTTATGTTGCCAAG AGACTGGAAATTGACTATGCACCTGCCATGGTTGGGTTTGAATTTAGAAATGGTAGATCTGTTCCAGTCTTTGATGGAATTGTTGTGTGCAATGAGTTCA AGGATGCAATATTAGAGGCATATGCTGAAGAAGAAGAGAGAAGAGATGCTGAAGAGAAGAAAAGAAATGAAGCGCAAGCTATTTCTAGGTGGTATCAACT TCTTTCATCAATCATAACCAGACAAAGGCTGAACAACTCGTACGGGAATGGTTTGTTGCCTCAAATGCCAAGCAATGTCCAAAATACAAATAACCAGCCG GATGTGCATGTTGGTAGTACACAACCTCCAGGACACCAAAAAGATGCGAAGGATCGTAAGTTAAATGCTCCATCAATGACTCTAACAGATGACCATGAGC ATGTGTTTTTGGTAGAGGATCAGAGTTTTGATGAGGAGACCTCAACAAGGACAAAGCGGTGTCATTGTGGATTTTCGGTCCAAGTAGAGGAATTGTAG
AA sequence Show only first row Show all	>Potri.004G087400.2 pacid=42794782 polypeptide=Potri.004G087400.2.p locus=Potri.004G087400 ID=Potri.004G087400.2.v4.1 annot-version=v4.1 MRTRSNNKQSSGKESTVSAIRDVDSESLADMSNEAVDKLVRRVKGRGSSGKKKQDNRLQCDSAATGENGLKSNGKQVVDARVTWNDLDARGLAQDPAAND TREVEGGGFQTTFQESDQEMDDIDWEDGSSSILGHVKNHPGDGIREVTIEFSESPDSAKRKPIRRATAEEKGLAELVHKVHLLCLLARGRIIDHACDDPL IQASLLSILPAHLSNTLGDPKLHAKALSPLAHWFHNNFHVASSVSEKRSFHSALSCALETREGTLEELAALSVALFRALKLTTRFVSILDVASIKPDADK YESLSQGTSKMHRGIFNTSTLMVDRPKEVFIPPKSLSCNEKKNVAETSSKTSCKSKDNCSRSKKIQSNDSPPAVELKDKMVDTFPCEAQNNTSEECVTKK SQGSKRKGDLEFEMQLQMAMSATAVATQSNKELDVKESSNSSDVSSPFKRIRKIANEESSSQGISTALGSRKIGSPLYWAEVYCSGENLTGKWVHVDAVH DIVDGEQKVEAAADACKTSLRYVVAFAGLGAKDVTRRYCMKWYKIASQRVNSLWWDAVLAPLRELESGATGGMAHLEKPHADASNEHENVIASGLSDLPM PNELPSNVDLPKESGRKNDVESSGRNSFAATRNTIEDMELQTRALTEPLPTNQQAYKNHLLYAIEKWLTKCQILHPKGPILGFCSGHPVYPRACVQTLRT KERWLREGLQVKVKELPAKVVKQSGKLKKVQFSEDDDYGETDSGVVELYGMWQLEPLQLPHAVNGIVPKNERGQVDVWSEKCLPPGTVHLRLPRVFYVAK RLEIDYAPAMVGFEFRNGRSVPVFDGIVVCNEFKDAILEAYAEEEERRDAEEKKRNEAQAISRWYQLLSSIITRQRLNNSYGNGLLPQMPSNVQNTNNQP DVHVGSTQPPGHQKDAKDRKLNAPSMTLTDDHEHVFLVEDQSFDEETSTRTKRCHCGFSVQVEEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Potri.004G087400 [exp]	0	1
AT1G17680			tetratricopeptide repeat (TPR)...		Potri.013G128900 [exp]	2.44	0.8511
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.014G117600 [exp]	4.24	0.8153
AT3G55080			SET domain-containing protein ...		Potri.008G047400 [exp]	7.41	0.8073
AT4G34280			transducin family protein / WD...		Potri.001G297600 [exp]	11.48	0.7759
AT3G27260		GTE8	global transcription factor gr...		Potri.001G335000 [exp]	12.72	0.8091	GTE903
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Potri.009G149600 [exp]	13.03	0.7981
AT1G69020			Prolyl oligopeptidase family p...		Potri.010G137801 [exp]	18.00	0.8065
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Potri.001G317200 [exp]	18.02	0.8188
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.014G055800 [exp]	21.00	0.8104
					Potri.004G102400 [exp]	21.49	0.7902

Compare expression of checked genes

Potri.004G087400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.