Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16720 280 / 3e-82 Protein of unknown function, DUF593 (.1) AT1G70750 243 / 4e-68 Protein of unknown function, DUF593 (.1) AT1G08800 107 / 1e-23 Protein of unknown function, DUF593 (.1.2) AT1G74830 105 / 2e-23 Protein of unknown function, DUF593 (.1) AT2G30690 93 / 4e-19 Protein of unknown function, DUF593 (.1) AT1G18990 87 / 2e-17 Protein of unknown function, DUF593 (.1) AT3G54740 75 / 1e-13 Protein of unknown function, DUF593 (.1.2) AT4G13630 74 / 3e-13 Protein of unknown function, DUF593 (.1.2) AT5G06560 66 / 9e-11 Protein of unknown function, DUF593 (.1) AT1G04890 61 / 3e-09 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129200 [exp] 1453 / 0 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.008G132200 [exp] 571 / 0 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 531 / 1e-173 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1) Potri.013G043400 [exp] 172 / 9e-44 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.005G220600 [exp] 152 / 2e-37 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.002G042500 [exp] 120 / 9e-28 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1) Potri.019G012200 [exp] 116 / 3e-26 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.019G007802 [exp] 100 / 2e-21 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.012G073400 [exp] 92 / 7e-19 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004050 [exp] 438 / 2e-139 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 426 / 5e-135 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1) Lus10006566 [exp] 115 / 6e-26 AT1G08800 246 / 5e-68 Protein of unknown function, DUF593 (.1.2) Lus10005527 [exp] 115 / 9e-26 AT1G08800 242 / 5e-67 Protein of unknown function, DUF593 (.1.2) Lus10033854 [exp] 96 / 7e-20 AT2G30690 213 / 6e-59 Protein of unknown function, DUF593 (.1) Lus10014743 [exp] 92 / 9e-19 AT2G30690 204 / 3e-56 Protein of unknown function, DUF593 (.1) Lus10024869 [exp] 91 / 2e-18 AT1G08800 191 / 4e-51 Protein of unknown function, DUF593 (.1.2) Lus10018782 [exp] 91 / 4e-18 AT1G08800 189 / 2e-50 Protein of unknown function, DUF593 (.1.2) Lus10033123 [exp] 71 / 4e-12 AT1G74830 430 / 4e-145 Protein of unknown function, DUF593 (.1) Lus10036656 [exp] 69 / 9e-12 AT1G74830 434 / 1e-146 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [poplar] [flax] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Potri.004G087600.8 pacid=42796081 polypeptide=Potri.004G087600.8.p locus=Potri.004G087600 ID=Potri.004G087600.8.v4.1 annot-version=v4.1 ATGGCAGGCAACAAGTTTGCAACCATGCTGCAAAGAAACACACACAAACTCACTGTAATTCTAGTGTATGCAGTTCTTGAATGGGTCTTGATCATTCTTC TACTCCTCAACTCTTTGTTCACATATCTGATAACCAAATTTGCCAAATACTTCGGTCTTAAAAAGCCTTGCCCTTGGTGTTCCAGGATTGATCATGTGTT GGAGCCCGGAAAAAACACCTACTCTTATAGAGATCTTGTGTGTGAGAGTCATGCAACTGAGATTTCCAAACTGAGTTATTGCTCAAATCATCAAAAACTG GCTGAAACACAGAATATGTGCATGGACTGCTTGGCTTCTCGGCCAAATCACAGCGATCAGTCTGGTGGGATGACAAGGAGAATTGCTCTCTTTTCTTGGG TTAGCAAGGATGCTATTGCAAATGGTGAAAATATTGTCAGGTGTTCTTGCTGCAATGAGAGTTTAAACAGCAATGTCTACCCTCCTTATCTGCTGTTCAA GCCTTCCTGGGAAGCTTTGAAGTATAGCAAGAAAGGAAATCTGATCGTAGAAGAGATGGATGATGAAAAGGATGGAATTTACTGCAAGGAAATAAGCAAA CCTGATAGCTTGGCACATTATACTGACCATGAAGACAGCAATGAGATTAAAAGAGATGATAGAGAAGGACAACAGGAAGATGAAGTGGCCACAGATGAAC ATCAAATGCTATCTGAAGTCGGAAGTTTTTGCCTCAAAGATGCAGTGGGGGAAGACTGTTCAAGGTCTGAATCAAACTTGCATTATGATGAAAAGGAAGC TCACATTATGGAGCAGGACTCGTATGGTATGGACTCTATTCATCAAGGATTTGATGACAATATGATTGAATATTGTTTTGATAAAGATAATTCTCTTGAA ATCATCAATCTGCATTTGGAGAGAAATCTTGGCTGTGACTTTAGTCGCTTGATCCCAGTTGATTTGATTGATTCATCAACCACTGCAAATCAAGAACCAT ACAACTTAAAGGAAGATCCTGCAGAGGAAATTCATCAAAATGGAATTTCTGATTCTGCATTACACAATGAAATGAATAAAGAAGAAATGACAAGTTATGC AGAAGTTGAAAGCATGGGAATAGCAGTGGATTGCTGTGAGAAATCTTCAGTTTCAAATTTCACAGAGATGAAAAAAGATTTGGACGCCAAGGAACACGAA AAAGTTACTGCTCCAGAAGAAGCTCTAACATTATCGCTTGGTGGAAACAGTGTTGACATGGAAGAAACAGTAGAACCAGATGAGCTTCCAGCAGCTTATG AGGAAGAAATTAATGGCTCCAACTTGTTTACCGATCAAACCAAATCCAAGGACTTCATAGAGCTTTCTGATTTTGGAACCAATCAAGCTCAAGAATCAAC AAGATTGCCATGCCTGCAAGAAGATCAGTCTTCTGAAACCGACAATGAAGCTGAGATCCCAGATGCCCTTGAAAGTAATGAGCTTGGTCCAAACGACACA GAAATAACTACCGAAGGAGAAAAAATGTTGTCAGCTGATGATAACCAAGTGGGTATATTATCTTCACATTTGGAGTCTAATGAAGCTGAGGAGGAGAAGT TTCCCGAGACACCTACTTCTGTTGACAGTGCTCACTACTTGCATAAGAAGCTTATGCTATTCGAGAAGCGAGAGTCAGGGACCGAGGAATCCTTAGACGG AAGTGTGGTAAGTGAGATGGATTTTGGCGATTCAGTTCTTACAGTTGAAAGGATGAAAACAGCTCTTAAAGCTGAAAGAAAAGCTTTCGGAGCATTATAT ACAGAACTAGAGGAAGAGAGGAGTGCCTCTGCAATAGCTGCAAACCAGACTATGGCTATGATAAACAGGCTTCAAGAAGAGAAGGCAGCAATGCAGATGG AAGCATTGCAATACCAGAGGATGATGGAAGAACAGTCTGAATATGACCAGGAAGCCTTGCAACTTCTAAACGAGCTCATGATCAAGAGAGAAAAGGAGAA GCAAGAGCTTGAGAAAGAGTTGGAAGTGTATCGCAAGAAGGTTTTGGACTATGAGGCTAAAGAAAAACTGAGAAAGATTAGAAGAATCAAGGATGGAAGT ATAAGAAGTAGAACTTCTTCTGTTACATGCAGCAACACAGAGGATCTTGATGAGCTATCTATTGATCTTAATCGTGAAGCAAGGGATGAAGATGGAGGCA GCAGCTTTGGAAACCAAGAAAGTGGTAATAATAATACTTCAGGTGATGGTGTTGTAAATTTGCAGGAAATAGCACTGGATTGTGTGAAGCAGATGACTGC TCTAGATGATTCCCTGGTTGAATTTGAGGAAGAGAGGCTGTCAATTTTAGATCAGCTCAAGGTTTTGGAGGAGAAGCTACTCCATTTGGATGACAATGAC GATATTGAGGATGCGCATTCGGGAGAGCATTCCTCAAATTATAGCGTTAAAGGATTCGGTGAAAGCTATGAAATGAGCACTCCAGACGAAAATGGGATTT CAATTGAAACGTCAAAGGATGGACGTTATCCCGAGAGGAAAACAATGAATTCCATGGCAAAGAACCTCCTTCCTCTTCTGGATGATGCTGCTGATAATGA GACTGAAGAAGGGTTTATATTCGATGAAAATGTTGAATCTGAGTTTGTTGAAATGGAAAACTCTTTGCTTCCCGAATTTGATCTAGACGGCAAAAAACTA GCCATTGAAGAGGAGGTAGATCATGTTTATGAGAGGCTACAAGCTCTTGAAGCAGACAGGGAGTTCTTAAAGCATTGTATGAGTTCAATACAGAAGGGAG ACAAGGGGATGGATCTTCTCCAAGAGATCTTGCAGCATCTGCGTGATCTTAGGACAGTGGAACTCCGGGTGAGGAGCTTTAGTGAGGATCCTCTGAAGCT TTAG
AA sequence Show only first row Show all	>Potri.004G087600.8 pacid=42796081 polypeptide=Potri.004G087600.8.p locus=Potri.004G087600 ID=Potri.004G087600.8.v4.1 annot-version=v4.1 MAGNKFATMLQRNTHKLTVILVYAVLEWVLIILLLLNSLFTYLITKFAKYFGLKKPCPWCSRIDHVLEPGKNTYSYRDLVCESHATEISKLSYCSNHQKL AETQNMCMDCLASRPNHSDQSGGMTRRIALFSWVSKDAIANGENIVRCSCCNESLNSNVYPPYLLFKPSWEALKYSKKGNLIVEEMDDEKDGIYCKEISK PDSLAHYTDHEDSNEIKRDDREGQQEDEVATDEHQMLSEVGSFCLKDAVGEDCSRSESNLHYDEKEAHIMEQDSYGMDSIHQGFDDNMIEYCFDKDNSLE IINLHLERNLGCDFSRLIPVDLIDSSTTANQEPYNLKEDPAEEIHQNGISDSALHNEMNKEEMTSYAEVESMGIAVDCCEKSSVSNFTEMKKDLDAKEHE KVTAPEEALTLSLGGNSVDMEETVEPDELPAAYEEEINGSNLFTDQTKSKDFIELSDFGTNQAQESTRLPCLQEDQSSETDNEAEIPDALESNELGPNDT EITTEGEKMLSADDNQVGILSSHLESNEAEEEKFPETPTSVDSAHYLHKKLMLFEKRESGTEESLDGSVVSEMDFGDSVLTVERMKTALKAERKAFGALY TELEEERSASAIAANQTMAMINRLQEEKAAMQMEALQYQRMMEEQSEYDQEALQLLNELMIKREKEKQELEKELEVYRKKVLDYEAKEKLRKIRRIKDGS IRSRTSSVTCSNTEDLDELSIDLNREARDEDGGSSFGNQESGNNNTSGDGVVNLQEIALDCVKQMTALDDSLVEFEEERLSILDQLKVLEEKLLHLDDND DIEDAHSGEHSSNYSVKGFGESYEMSTPDENGISIETSKDGRYPERKTMNSMAKNLLPLLDDAADNETEEGFIFDENVESEFVEMENSLLPEFDLDGKKL AIEEEVDHVYERLQALEADREFLKHCMSSIQKGDKGMDLLQEILQHLRDLRTVELRVRSFSEDPLKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16720			Protein of unknown function, D...		Potri.004G087600 [exp]	0	1
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.019G087700 [exp]	5.00	0.8058	Pt-SERK2.3
AT2G26850			F-box family protein (.1)		Potri.016G035900 [exp]	6.70	0.8166
AT5G39420		CDC2CAT	CDC2C (.1)		Potri.017G088200 [exp]	8.88	0.8240
AT4G38280			unknown protein		Potri.004G205200 [exp]	10.77	0.8166
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Potri.005G003400 [exp]	10.81	0.7946
AT1G60890			Phosphatidylinositol-4-phospha...		Potri.003G019100 [exp]	12.48	0.7889
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.013G117200 [exp]	19.62	0.7905	Pt-SERK2.2
AT1G30760			FAD-binding Berberine family p...		Potri.001G463550 [exp]	20.78	0.7760
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Potri.003G149000 [exp]	21.21	0.7487	LBD3.1
AT1G35510			O-fucosyltransferase family pr...		Potri.019G080900 [exp]	23.06	0.7972

Compare expression of checked genes

Potri.004G087600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.