Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01340 178 / 2e-56 At17.1 unknown protein AT5G37840 176 / 2e-55 unknown protein AT1G66480 174 / 1e-54 PMI2 plastid movement impaired 2 (.1) AT1G71015 158 / 1e-48 unknown protein AT2G30230 42 / 9e-05 unknown protein AT3G03280 40 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G128800 [exp] 343 / 2e-121 AT1G66480 192 / 8e-62 plastid movement impaired 2 (.1) Potri.010G113800 [exp] 229 / 3e-76 AT2G01340 207 / 1e-67 unknown protein Potri.008G128700 [exp] 228 / 1e-75 AT2G01340 206 / 3e-67 unknown protein Potri.011G153000 [exp] 46 / 5e-06 AT1G64700 160 / 1e-49 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009120 [exp] 181 / 7e-56 AT4G18975 198 / 1e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) Lus10036005 [exp] 171 / 4e-53 AT2G01340 174 / 2e-54 unknown protein Lus10016709 [exp] 137 / 1e-40 AT2G01340 147 / 7e-45 unknown protein Lus10043472 [exp] 120 / 5e-34 AT5G37840 134 / 2e-39 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.004G088200.1 pacid=42794500 polypeptide=Potri.004G088200.1.p locus=Potri.004G088200 ID=Potri.004G088200.1.v4.1 annot-version=v4.1 ATGGGAAACAATATAGGAGGAGGGAATAAAGCAAAGGTGATGCTGGTCAATGGTGAAACTTTCAAGTTAAAGACTCCGGCAAGGGCCGGCGAGGTCGTTA AGGATTATCCAGGGTATGTATTATTGGATTCGGAAGCTGTTAAGCATTTTGGGATTCGTGCTAAGCCATTAGAGCCTCAACAAGAATTAAAGGCCAAGAA AATATATTTCCTAATAGAGTTGCCTCAAATTCCTGAGGAAAAAGATCCTAGGAGTACTAGGAGGGTTCGGTCAGCTATACATATGAGCGCCAAAGAACGG CTTGAGAACTTGATGTTAACTCGGAGGTCAGTTTCTGACCTTTCGATGGTAAGACCATCGTCGAGTCAAACATCAGATGGGCGGGAGCCGGTTCAGGTGA AAGTTAGGCTGCCTAAGGCCCAAGTGCAAAAATTGGTGGAGGAGAGCCAAGATGAAGTAGAGGTGGCTGAAAAGCTTATTGATCTATACATGGGAAATTC CGGTGGTATTAATGGTACAGATGGGCACCGGCACGTGCATTGGAAGCCGGAGCTTGGTAACATCTCGGAGAGTTTCAAGGCAACTAATGAGAAACGAGTG AGTTTTGCTCAAGAAGAGGGCGAAACCCGTTTAGCTGTTGCCTCTCCTTAG
AA sequence Show only first row Show all	>Potri.004G088200.1 pacid=42794500 polypeptide=Potri.004G088200.1.p locus=Potri.004G088200 ID=Potri.004G088200.1.v4.1 annot-version=v4.1 MGNNIGGGNKAKVMLVNGETFKLKTPARAGEVVKDYPGYVLLDSEAVKHFGIRAKPLEPQQELKAKKIYFLIELPQIPEEKDPRSTRRVRSAIHMSAKER LENLMLTRRSVSDLSMVRPSSSQTSDGREPVQVKVRLPKAQVQKLVEESQDEVEVAEKLIDLYMGNSGGINGTDGHRHVHWKPELGNISESFKATNEKRV SFAQEEGETRLAVASP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01340		At17.1	unknown protein		Potri.004G088200 [exp]	0	1
					Potri.001G320601 [exp]	3.87	0.9740
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.017G010000 [exp]	4.47	0.9737
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G179400 [exp]	5.29	0.9773
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.005G008901 [exp]	7.74	0.9529
AT5G26810			Pectin lyase-like superfamily ...		Potri.013G008100 [exp]	8.36	0.9641
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034200 [exp]	10.67	0.9587
					Potri.012G100300 [exp]	10.95	0.9618
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G141125 [exp]	11.61	0.9737
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009000 [exp]	12.72	0.9661
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Potri.007G130700 [exp]	16.70	0.9529

Compare expression of checked genes

Potri.004G088200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.