Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69550 649 / 0 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G17680 506 / 3e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 478 / 7e-147 TAO1 target of AVRB operation1 (.1) AT2G14080 478 / 8e-147 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 470 / 9e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G25510 463 / 8e-137 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G11250 449 / 2e-136 Disease resistance protein (TIR-NBS-LRR class) (.1) AT4G16890 442 / 6e-133 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27180 431 / 3e-127 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 427 / 5e-127 transmembrane receptors;ATP binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G030700 [exp] 1468 / 0 AT1G69550 602 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G030318 [exp] 1306 / 0 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G031899 [exp] 1194 / 0 AT1G69550 469 / 6e-141 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G031101 [exp] 1020 / 0 AT5G17680 557 / 8e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 640 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 637 / 0 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 637 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 630 / 0 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 606 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018616 [exp] 537 / 3e-167 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029722 [exp] 514 / 2e-161 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 512 / 5e-159 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041060 [exp] 494 / 6e-152 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 474 / 6e-147 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029628 [exp] 472 / 1e-142 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 446 / 6e-135 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10026201 [exp] 443 / 6e-134 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 439 / 2e-132 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 434 / 5e-131 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G088500.2 pacid=42795330 polypeptide=Potri.004G088500.2.p locus=Potri.004G088500 ID=Potri.004G088500.2.v4.1 annot-version=v4.1 ATGGCTTCCACTCCTACCATTACTCCTTCGAATTGGAAGTACGATGTGTTCCTCAGTTTTAGAGGCGCAGACACCCGCAATAGTTTTACAAGTCATCTTT ACAAGGCTTTGTGTCAAAACCAAATTCATGCTTACATCGATTATAAACTTCATGGAGGAGAAAAGATTGAGCCTGCCCTCTTGGAAAGGATTGAAGAGTC ATATATTTCGGTAGTCATTTTCTCTGAAAATTATGCAGATTCCACTTTCTGTTTGAGGGAACTCTCCAAGATTCTTGAGTGCATGGAGACCAAAGGACAG AAGGTTTTGCCAGTTTTTCACCAACTTGATCCAAGCCATGTTCAAGATCTGACTGGGAGCTATGGAGACGCAATTTGCAAGCATGAAAGTGATTGCAGTT CTCAAGAAGTAGAGAGTTGGAGACATGCTTCGAAAGAAATAGCTAATCTCAAGGGCTGGGATTCGAAAGTCATCAGGGATGAGACCAAGCTAATCGAGGA AATTGTTTCTGACATTCAAAAGAAATTGCAGCATATGCCTGCACCCTCAATTGATTCAAAACGCATTATTGGAATGAAATCACGCGTTGAAGACATTGAA TCGTTACTATCCTTTGGATCAACCGGTGTGCTCATTGTGGGAATATGGGGGTTGGGTGGTATAGGCAAGTCAACAACGGCTGAAGCTGTATATCATCGAA ACTCTCATAAATTTGAAGGTCATTGCTTTTTCCGAAATGTAATGGCAGAATCACATAAGCATGGACTAGTTCATGTACTGCAGGAAATTCTTCGTGAAGT ATTAGAGAACAAAGATCTGAACATAGGCACAAAGGTGTTACCCCCGTACATTAAGCGAATGCTTCAAAGAAAAAAGGTCCTCATAGTTCTTGATGATGTC AACAGTTCTCTAGATTTAAGAGATTTACTAGGAGAGGATGGTTTGTTTGGCCAAGGAAGTAGAATCATTGTGACAAGTAGAGATTGGCAAGTGCTTATAA ATGCATGCGAAGAAGACAACATTTACGAGGTTAAGAATTTAAATGAAGACGATGCTCTTGAACTCTTCAGCTTGCATGCTTTCAGACAAAATAATCCTAT ACAAGGATATACAGAGCTATCAAAAAGTGTGGTAAGCTGTGTTGAAGGCATTCCATTATTTCTGGAGGCTTTAGGTGCCAGTCTATACAAAAAGACTAGT GTAGAATACTGGGAAAGTAAGGTGGCACAGCTAAGAACAAAAATTGGCGAGGACATTAAGAAAAGTTTGGAAATGTGTTTTGATGAATTAAATCAGACAG AAAAGAAAATATTTCTTGATATAGCATGTTTCTTTGGATGGTGCAGAAGGGATGTTCTCCATCAAACACTAGATCTTGAAGAAAGAAGTGGGATAGATCG TCTCACTGATATGTGTCTCATAAAAATTATTGACAACAGGATCTGGATGCATGATATGCTGCAAAAACTAGGGCGACAAATTGTCCACCAAGAAAACGTT GATCCTAGAGGACGTAGCAGGTTGTGGGAGGCTGAGGATGTCTATCATGTATTAACAAATCATCAGGGGACAGGAAAAGTGGAAGCCATATCCCTCGACA TGTCTGCAACTAAAGAAATGAACTTAAGTCCTACAGCATTTGAAGGGATATATAATCTAAGATTGTTCGATTTCCATAATCCAAATTCCCCAGATGAGCT AACAAGGATTCGCCTTCCTCGAGGGCTTCAATTTCTTTCAAATGGGCTAAGGATTCTCTACTGGTATAATTACCCTTTGAAATCCTTGCCATCAAATTTT TGTCCAGAGAAACTTGTTGAGCTTAAAATGCCTTGTAGCCAGCTCGAAGAACTTTGGAATGAATGTCAGCCACTTGAGAATTTGAAATTAATGAACCTCA GTTACTCCTCGAAGCTGAGCTTAGTTAATTCAGACTTGTCCAAAGTTCCAAATCTTGAGGTTCTAAATCTGGCATGGTGTTGTAGTTTGGTTAAGTTACC TTCCTCTATTAAATACTGCACCAGACTTACTGAATTAGATCTTAGGAAATGTGAGAGTTTATGTACTTTGCCCTCGTCAATTGGGTGCCTCACTCAACTT GTTAAATTGAATTTAACCCACTGCAAAGGTCTCGCTAGTCTACCATACAGCATTTGTGAGTTGAAATGTCTTGCGACGCTTGATCTCGAGCTTTGCTCAG AACTAACAAGTTTACCTAGCAGTATTGGTGAGTTGGAATCTCTTGTAGAGCTTAATCTTGGTCATTGCTCAAAACTATCAAGCCTTCCAAATAGCATTGG TGAGTTGAAATGTCTTGCGAGGCTTTATCTTGGTTATTGCTCAAAACTAACAAGTCTACCAGACAAAATTGGCGAGTTGAAATATCTTAAAGAGCTTAAA CTTCATCATTGCTTAGCACTAGCGAGCCTTCCAAACAGCATTGGCGAGTTGAAATCTCTTGACAATCTTGATTTTTATTATTGCTTAAAACTAGCAAGCT TTCCAGACAGCATTGGCGAGTTGAATTGTCTTGCGACACTTGATCTTAAGTTTTGCTCAAAACTAGCAAGTGTACCAGATAGCTTTGGTCAATTGAAATG TCTTTCGAGACTTGACCTTGGTTATTGCTCAGAACTAGCAAGTCTACCTGATAGCTTTGGTGATCTCAAATGTCTTTCGAGGCTTGATCTTTGTTATTGC TTAGAACTGGCAAGTCTACCTGACAGCATTGGCGAGTTGAAATCTCTTGTAGAGCTTAATCTTGGTTACTGCTCAAAACTAGCAAGCCTTCCAGATAGCA TTGGCAAGTTGAAATGTCTTGAGATGCTTGATCTAAATTATTGCTCAAAACTCGCAAGTCTACCAGACAGCATTGGTAAGTTGAAATCTCTTGTAAAGCT TCATCTTTCTTCTTGCTCAAAACTAGCAAGCCTTCCAGACAGCATTGGCAAGTTGAAATCTCTTGCAGAGCTTCATCTTTCATCTTGCTTAAAACTAGCA AGTCTTCCTGACAGCATTGGCGAGTTGAAATGTCTTCCCAGGCTTGATCTTGGTTATTGCTTAAAACTAGTAAGTCTTCCTGACAGCATTGGTGAGTTGA AATCTCTTGCAAAGCTTAATCTTTATTATTGCTCAGAACTAGCAAGTCTGCCTGACAGCATTGGCAAGTTGAAATCTCTTGTAGAGCTTCATCTTGGCTA TTGCTATAAACTAGCATGGCTTCTAGAGAGCATTGGCGAGTTGAAATGTCTTGTGATGCTTAATCTTCATCATTGCTCAGAATTAGCATGGCTTCCAAAC AGCATTGGCAAGTTGAAATCTCTTGTAGAGCTTCATTTTGGTTATTGCTATAAACTAGCATGGCTTCCAGAGAGTATTGGCGAGTTGAAATGTCTTGTGA TGCTTAGTCTTCATCATTGCTCAGAATTAACATGGCTTCCAGACAGCATTGGCAAGTTGAAATCTCTTGTAGAGCTTCATCTCGGTTATTGCTATAAACT AGCATGGCTTCCAGAGAGCATTGGTGAGTTGAAATGTCTTGTGACCCTTAATCTTCATCATTGCTCAGAATTAGCTTGGCTTCCAGACAGCATTGGCGAG TTGAAATGTCTTGTGATGCTTGATCTTAATTCTTGCTCAAAACTAGCAAGTCTGCCAAACAGGATTGGCAAGTTGAAATCTCTAGCAGAGCTTTATCTTT CTTCTTGCTCAAAACTAGCAAGTCTTCCAAACAGCATTGGCGAGTTGAAATGTCTTGGGACGCTTGATCTTAATTGTTGCTCAGAATTAGCATGTCTACC AGATAGCATTGGTAAGTTGAAATCTCTTTTAGAGCTTCATCTTTCTTCTTGCTCAAAACTAGCATGTCTTCCTAACAACATTGGCGAGTTGAAATGTCTG TTAAGGCTTAATCTTAGTTATTGCTCGAAGCTAGCAAGCCTTCCAAACAACATTGGCGAGTTGAAATGTCTTGTGATGCTTAATCTTAATTCTTGCTCAG AACTAGTAAGTCTACCAAACAGCATTGGCGAGTTGAAATCTCTTGTAGAGCTTCATCTTTCTTCTTGCTCAAAACTAGCAAGCCTTCCAAACAACATTGG CAAGTTGAAATCTCTTGAAAAGCTTGATCTTTCTCCTTGA
AA sequence Show only first row Show all	>Potri.004G088500.2 pacid=42795330 polypeptide=Potri.004G088500.2.p locus=Potri.004G088500 ID=Potri.004G088500.2.v4.1 annot-version=v4.1 MASTPTITPSNWKYDVFLSFRGADTRNSFTSHLYKALCQNQIHAYIDYKLHGGEKIEPALLERIEESYISVVIFSENYADSTFCLRELSKILECMETKGQ KVLPVFHQLDPSHVQDLTGSYGDAICKHESDCSSQEVESWRHASKEIANLKGWDSKVIRDETKLIEEIVSDIQKKLQHMPAPSIDSKRIIGMKSRVEDIE SLLSFGSTGVLIVGIWGLGGIGKSTTAEAVYHRNSHKFEGHCFFRNVMAESHKHGLVHVLQEILREVLENKDLNIGTKVLPPYIKRMLQRKKVLIVLDDV NSSLDLRDLLGEDGLFGQGSRIIVTSRDWQVLINACEEDNIYEVKNLNEDDALELFSLHAFRQNNPIQGYTELSKSVVSCVEGIPLFLEALGASLYKKTS VEYWESKVAQLRTKIGEDIKKSLEMCFDELNQTEKKIFLDIACFFGWCRRDVLHQTLDLEERSGIDRLTDMCLIKIIDNRIWMHDMLQKLGRQIVHQENV DPRGRSRLWEAEDVYHVLTNHQGTGKVEAISLDMSATKEMNLSPTAFEGIYNLRLFDFHNPNSPDELTRIRLPRGLQFLSNGLRILYWYNYPLKSLPSNF CPEKLVELKMPCSQLEELWNECQPLENLKLMNLSYSSKLSLVNSDLSKVPNLEVLNLAWCCSLVKLPSSIKYCTRLTELDLRKCESLCTLPSSIGCLTQL VKLNLTHCKGLASLPYSICELKCLATLDLELCSELTSLPSSIGELESLVELNLGHCSKLSSLPNSIGELKCLARLYLGYCSKLTSLPDKIGELKYLKELK LHHCLALASLPNSIGELKSLDNLDFYYCLKLASFPDSIGELNCLATLDLKFCSKLASVPDSFGQLKCLSRLDLGYCSELASLPDSFGDLKCLSRLDLCYC LELASLPDSIGELKSLVELNLGYCSKLASLPDSIGKLKCLEMLDLNYCSKLASLPDSIGKLKSLVKLHLSSCSKLASLPDSIGKLKSLAELHLSSCLKLA SLPDSIGELKCLPRLDLGYCLKLVSLPDSIGELKSLAKLNLYYCSELASLPDSIGKLKSLVELHLGYCYKLAWLLESIGELKCLVMLNLHHCSELAWLPN SIGKLKSLVELHFGYCYKLAWLPESIGELKCLVMLSLHHCSELTWLPDSIGKLKSLVELHLGYCYKLAWLPESIGELKCLVTLNLHHCSELAWLPDSIGE LKCLVMLDLNSCSKLASLPNRIGKLKSLAELYLSSCSKLASLPNSIGELKCLGTLDLNCCSELACLPDSIGKLKSLLELHLSSCSKLACLPNNIGELKCL LRLNLSYCSKLASLPNNIGELKCLVMLNLNSCSELVSLPNSIGELKSLVELHLSSCSKLASLPNNIGKLKSLEKLDLSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69550			disease resistance protein (TI...		Potri.004G088500 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.001G379700 [exp]	1.73	0.8878
AT5G17680			disease resistance protein (TI...		Potri.019G070300 [exp]	3.46	0.8847
AT5G17680			disease resistance protein (TI...		Potri.005G031101 [exp]	4.47	0.8851
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G386300 [exp]	5.74	0.8604
AT1G66920			Protein kinase superfamily pro...		Potri.015G018000 [exp]	5.91	0.8764
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044200 [exp]	6.00	0.8659
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.002G068700 [exp]	6.32	0.8324
AT1G69550			disease resistance protein (TI...		Potri.005G030700 [exp]	7.07	0.8818
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	7.21	0.8821
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Potri.003G170600 [exp]	7.48	0.8581

Compare expression of checked genes

Potri.004G088500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.