Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03380 1441 / 0 DEG7, DEGP7 degradation of periplasmic proteins 7, DegP protease 7 (.1) AT3G03370 57 / 9e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G128300 [exp] 1595 / 0 AT3G03380 1694 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.004G088700 [exp] 1588 / 0 AT3G03380 1365 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009122 [exp] 1286 / 0 AT3G03380 814 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10028521 [exp] 1239 / 0 AT3G03380 1385 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10042507 [exp] 646 / 0 AT3G03380 1144 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10017637 [exp] 628 / 0 AT3G03380 618 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10033594 [exp] 563 / 5e-180 AT3G03380 592 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10017636 [exp] 236 / 8e-71 AT3G03380 226 / 3e-68 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10038155 [exp] 98 / 3e-22 AT3G03380 94 / 1e-21 degradation of periplasmic proteins 7, DegP protease 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0466 [poplar] [flax] PDZ-like PF12812 [poplar] [flax] PDZ_1 PDZ-like domain CL0466 [poplar] [flax] PDZ-like PF13180 [poplar] [flax] PDZ_2 PDZ domain CL0124 [poplar] [flax] Peptidase_PA PF13365 [poplar] [flax] Trypsin_2 Trypsin-like peptidase domain
Representative CDS sequence Show only first row Show all	>Potri.004G088600.2 pacid=42795736 polypeptide=Potri.004G088600.2.p locus=Potri.004G088600 ID=Potri.004G088600.2.v4.1 annot-version=v4.1 ATGGAAGACTCAAATTCGCGAGAGATAGTAGAGTCAGAGATGGAATCCATGGACTTACGAAGCCAGGAATCGACTGATCAGGTTGAGTTAGATAGCGAGT TGCCACCAGAGAAGGAAGTCATAACCGACGACTGGAGAGACGCCATCAACAAGGTGGTCCCCGCTGTGGTGGTTTTGCAAACCACCGCGTGCCGCTCCTT CGACACCGAACTTCCTTCCTCGGGGTCCGCCACTGGGTTTGTTGTTGATAAGAATCACGGTATCATTCTCACTAACCGACATGTCGTCAAGCCTGGCCCT GTAGTTGCCCAGGCTATATTTGTCAACAATGAAGAAATTCCAGTGTATCCAATTTACAGAGACCCTGTTCATGATTTTGGATTCTTTCGTTATGATCCTA GTGCAATACAATTTCACAAGTATGAGGAGATTCCTCTTGCCCCAGAAGCTGCTTCTGTTGGGCTTGAAATCAGAGTTATCGGCAATGATAGCTGCGAGAA GGTTTCTATTTTGGCCGGTACCCTTGCTCGTTTGGATAGAAATGCACCTACTTATAGAAGAGATGGTTATAATGACTTCAATACCTTCTACATGCAAGCA GCCTCCGGAACTAAGCGTGGTTCTAGTGGTTCCCCGGTGATTGATAAGCAAGGGAGGGCAGTGGCCTTGAACGCTGGGGGCAGTGTATCATCTTCATCAG CCTTCTATTTACATTTAGAGAGAGTTGTTAGGGCATTGGCATTTCTCCAGAAGTCCAAAGATGCCTGTAAAAACAAATGGGAAGCAGTTTCTATACCTCG TGGCACCCTTCAGGTAACGTTTCTCCATAAAGGATTTGATGAGACACGCCGGCTTGGTCTTCCGAATGAAACAGAGCAGATGGTGCGGCAAGCCTCTGCA CCAGGTGAAACTGGAATGTTGGTTGTTGACTCTGTGGTGCCATGTGGGCCAGCTGATAGGCAATTGGAGTCAGGGGATGTGCTTGTGCGTGTGAATGGGG AAGTGACTACTCAGTTTTTAAAATTGGAGGCATTGCTTGATGACAGTGTTGACAAAAAGATCGAATTACAGATTGAAAGGGGTGGCACATCATTAACCGT TGATATAGTGGTTCAGGATTTGCACTTGATAACTCCTGACTGCTTCTTAGAAGTAAGTGGTGCAGTGATACACCGTTTGTCTTATCAACAGGCCAGAAAC TTCTGCTTCCAATGTGGTCTTGTATATGTTTCGGACCCCGGATACATGCTATCTAGGGCTGGCATTCCTCGTCATGCCATCATTAAGAAGTTTGCCGATG ATGAGATATCACAACTTGAAGATGTAATCTCTGTTCTGTCTAAGCTATGTAAGGGTGATAGAGTGCCATTGGAGTATATAAGCTACAGGGATCGCCATCG AAGAAAGTCTACCCTGGTCACAATTGATCGCCATGAATGGTACGATGCTCCGAAGATATACACACGGGATGATAGTTCTGGTTTATGGATGGCAAGGCCT GCTATTCAACCGACCACCCTGCAGTTGTCACCTTGTAGTAGCAATGTCACTCAAGGTCTAAACAGCCAAGCATCTTCATTGAATAGTGAATCAACTCCTG CTGAAGGTACGGATCAAGCTAACAACCAGGAGTTGACACATGATATTTTAAGAACAGAAGCCGGTTATGAACATATTTCTGAGGAGGTCCATTCCAGGGA AGAGTGTGATGTTAAAACTAATAAGCAACAGGTACAGGGGAACTTGTCCTCTGATGAAATTGCAGTTGCTGACCATTCCTCGCTTGAAATTGGAGAAATG AAATTGGAGACTCCAGGTACCACAGAAATTACAGTTTCGAATGGCTATGAAGGTGCAATAGCAGCAGCAACTAATGCTTCATTTGCGGAATGTGTGGTGG AGCCCACTCTTGTAACATTGGAGGTCAATGTGCCACCATCATGTTTGCTTGATGGCATCCATTCAGTGCATGCTTCTGGGACTGGTGTTGTTGTACATCA TTCTCAAGACATGGGATTGGTTGCTATTGACAAGAACACCGTTGAAACATCTGCATGTGATGTGATGCTGTCATTTGCTGCTTTTCCTATCGAGATTCCA GGAGAGGTTGTCTTTCTTCATCCTGTTTACAATTATGCTCTTGTTGGTTATGATCCCTCTGCTCTGGGAGCTGTTGGTGCTTCTATGGTTCGTGCTGCTG AGTTACTTCCTGAGCCTGCATTATGTCGTGGAGATCCAATATATCTGATTGGGTTAAGTAAAAATCAACGAGCAAAGTCTAGGAAATCAATTGTGACAAA CCCTTATGTTACATTAAATTTTGGCTATGCTGATCGTCCACGGTATAGAGCAATAAATATGGAAGTGATTGAGCTTGACACTGATTTTGGTAATGCATTT ACTGGTGTGCTATGTAATGAGCATGGAAAGGTTCAGGCTATATGGGGGAGCTTTTCAAATAAGCCAAAATCTAGTCACACTACATCAAAGGATCATCAAT TTGTTCGAGGTGTCCCAATCTACATGATTAGCCAAGTACTTGACAAAATCATATCTGGTGCAAATGGGGCTTCTATTCTCATAAACGGTATCAAAAGGTC AATGCCACTTGTTAGGACTTTAGAGGTGGAACTTTGCTCTAGATTGCTTTCAAAGGCCCGGAGTTTTGGTCTTGGTGATGAATGGATCCAAAGACTTGTA AAGAAAGACCCAATGAGACGACAAGTTTTGCGTGTTAAAGGTTGTTTGGCTGGATCTAACACTGAGAATCTATTAAAACAAGGCGATATGTTGTTGGCAA TCAACAAAGAGCCAGTTACTTGCTTCCAAGATGTAGAAAATGCATGTCAAGCATTAGAGAACTGTGTTGACAGTGATGGGAAGCTTAAAATTACCATTTG TCGGCAGGGAGGTGAAGTTGATCTACTTGTTGGAACAGACATTAGGGATGGTAATGGTACAACACGAGCAGTAAATTGGTGTGGCTGTCTTGTTCAGGAT CCTCATCCAGCAGTTCGTGCTCTTGGATTTCTTCCTGGTGAAGGTCATGGTGTCTATGCAGCAATGTGCTGCCGTGGAAGTCCTGCAGATAGATATGCTC TAGGTGCTCTTAGATGGATTGTTCGAGTCAATGGAAAACCCACTCCTGACTTGGATGCTTTTGTAAATGTGACAAAGGGATTACGATATGATGAGTTCGT TCGTGTAAAGACCATCAATCTGGATGGGAAGCCACGAGTGCTAACGTTGAAGCAGGACTTGCACTACTGGCCTACATGGGAGTTGAGGTTTGATCCAAAC ACCGCTAGGTGGCGGAGAGAGACAATAAAGGCTTTAGATTGCAATATTGAATAA
AA sequence Show only first row Show all	>Potri.004G088600.2 pacid=42795736 polypeptide=Potri.004G088600.2.p locus=Potri.004G088600 ID=Potri.004G088600.2.v4.1 annot-version=v4.1 MEDSNSREIVESEMESMDLRSQESTDQVELDSELPPEKEVITDDWRDAINKVVPAVVVLQTTACRSFDTELPSSGSATGFVVDKNHGIILTNRHVVKPGP VVAQAIFVNNEEIPVYPIYRDPVHDFGFFRYDPSAIQFHKYEEIPLAPEAASVGLEIRVIGNDSCEKVSILAGTLARLDRNAPTYRRDGYNDFNTFYMQA ASGTKRGSSGSPVIDKQGRAVALNAGGSVSSSSAFYLHLERVVRALAFLQKSKDACKNKWEAVSIPRGTLQVTFLHKGFDETRRLGLPNETEQMVRQASA PGETGMLVVDSVVPCGPADRQLESGDVLVRVNGEVTTQFLKLEALLDDSVDKKIELQIERGGTSLTVDIVVQDLHLITPDCFLEVSGAVIHRLSYQQARN FCFQCGLVYVSDPGYMLSRAGIPRHAIIKKFADDEISQLEDVISVLSKLCKGDRVPLEYISYRDRHRRKSTLVTIDRHEWYDAPKIYTRDDSSGLWMARP AIQPTTLQLSPCSSNVTQGLNSQASSLNSESTPAEGTDQANNQELTHDILRTEAGYEHISEEVHSREECDVKTNKQQVQGNLSSDEIAVADHSSLEIGEM KLETPGTTEITVSNGYEGAIAAATNASFAECVVEPTLVTLEVNVPPSCLLDGIHSVHASGTGVVVHHSQDMGLVAIDKNTVETSACDVMLSFAAFPIEIP GEVVFLHPVYNYALVGYDPSALGAVGASMVRAAELLPEPALCRGDPIYLIGLSKNQRAKSRKSIVTNPYVTLNFGYADRPRYRAINMEVIELDTDFGNAF TGVLCNEHGKVQAIWGSFSNKPKSSHTTSKDHQFVRGVPIYMISQVLDKIISGANGASILINGIKRSMPLVRTLEVELCSRLLSKARSFGLGDEWIQRLV KKDPMRRQVLRVKGCLAGSNTENLLKQGDMLLAINKEPVTCFQDVENACQALENCVDSDGKLKITICRQGGEVDLLVGTDIRDGNGTTRAVNWCGCLVQD PHPAVRALGFLPGEGHGVYAAMCCRGSPADRYALGALRWIVRVNGKPTPDLDAFVNVTKGLRYDEFVRVKTINLDGKPRVLTLKQDLHYWPTWELRFDPN TARWRRETIKALDCNIE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.004G088600 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.001G425500 [exp]	8.48	0.7972
AT4G27220			NB-ARC domain-containing disea...		Potri.001G444050 [exp]	9.84	0.8368
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Potri.017G021330 [exp]	10.95	0.8094
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003350 [exp]	14.49	0.7970
AT4G27220			NB-ARC domain-containing disea...		Potri.001G429660 [exp]	15.90	0.7826
AT1G60690			NAD(P)-linked oxidoreductase s...		Potri.002G234000 [exp]	18.33	0.7743
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Potri.002G234201 [exp]	19.33	0.7607
AT2G26510		PDE135	pigment defective embryo 135, ...		Potri.002G129400 [exp]	21.16	0.7228	PDE135.2
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.002G205400 [exp]	26.70	0.7593
AT4G19050			NB-ARC domain-containing disea...		Potri.004G170392 [exp]	27.92	0.7462

Compare expression of checked genes

Potri.004G088600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.