Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03380 1365 / 0 DEG7, DEGP7 degradation of periplasmic proteins 7, DegP protease 7 (.1) AT3G03370 57 / 7e-09 unknown protein AT3G27925 52 / 2e-06 DEGP, DegP1, DEG1 DegP protease 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G088600 [exp] 1608 / 0 AT3G03380 1442 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.017G128300 [exp] 1489 / 0 AT3G03380 1694 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009122 [exp] 1228 / 0 AT3G03380 814 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10028521 [exp] 1194 / 0 AT3G03380 1385 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10042507 [exp] 1080 / 0 AT3G03380 1144 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10017637 [exp] 602 / 0 AT3G03380 618 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10033594 [exp] 535 / 1e-169 AT3G03380 592 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10017636 [exp] 223 / 3e-66 AT3G03380 226 / 3e-68 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10038155 [exp] 93 / 1e-20 AT3G03380 94 / 1e-21 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10008781 [exp] 49 / 1e-05 AT3G27925 641 / 0.0 DegP protease 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0466 [poplar] [flax] PDZ-like PF12812 [poplar] [flax] PDZ_1 PDZ-like domain CL0124 [poplar] [flax] Peptidase_PA PF13365 [poplar] [flax] Trypsin_2 Trypsin-like peptidase domain
Representative CDS sequence Show only first row Show all	>Potri.004G088700.1 pacid=42795133 polypeptide=Potri.004G088700.1.p locus=Potri.004G088700 ID=Potri.004G088700.1.v4.1 annot-version=v4.1 ATGGGGTTCCAAAACGACATGCCGTTCCTACCAGAGAAGGAAGCATTTGCCGATGATTGGGCTGAAACCGTCAACAAGGTTGTCCCTGCGGTGGTGGTTT TGCAAACAACGACATGTCGTGCGTTTGATACTGAGCTTCCTTCCTCTGGCTCTGCCACTGGGTTCGTCGTTGACAAGCAACGCGGTATTATCCTGACTAA CCGACATGTTGTCAATCCTGGCCCCGTCAATGCCCAAGCTATATTTGTAAGCAACGAAGAAACTCCACTGCGTCCAATATATAGAGATCCGGTCCATGAT TTTGGATTCTTTTCTTATGATCCTGGTGCGATACAATTTTTGAACTATGAGGAGATTCCTCTTGCCCCTGAGGCTGCTTCTGTTGGACTGGAAATCAGAG TTATTGGAAATGATAGTTCTGAGAAGGTTTCCATTTTGTCTGGTATCCTTGCTCGTCTGGATCGAAATGCTCCTGCTTATGAAAAAGATGGTTATAATGA CTTCAATACCTTCTACCTGCAAGCAGCATCTGGAACTAAGCCTGGTTCCAGTGGTTCCCCTGTAATTGATAAGCAAGGTAGGGCAGTGGCCTTGAATGCT GGGAGCAGTTCATCAAGTTCATCAGCCTTCTATTTACCTTTAGAGAGAGTTGTTAGGGCATTGAGACTTCTTCAGAAGTGCAAAGATGCTCGTGCCAATA AATGGGAGACAGTATCCATACCTCGTGGTACACTTCAGGTAACATTTTGCCATAAGGGATTTGATGAGACACGCCGACTTGGTCTTCGAAGTGAAACAGA GCAGATGGTACGAAATGCGTCTCTACTAGGTGAAACCGGAATGCTTGTTGTTGACTCTGTGGTGCCAGGTGGTCCAGCTTATGGGCAACTAGAGCCAGGG GATATGCTTGTTTCCGTGGATGGGGAGTTAACTACTCGGTTTTTGAAATTGGAGACATTACTAGATGACAATGTTGATCAAAAGATTGGGTTACAGATTG AAAGGGGTGGCATATCATTGACTGTTAATTTAACGGTTCAGGATTTACACACAATAACTCCTAATCATTTCTTAGAAGTAAGCGGTGCAGTGATACACCC ATTGTCTTATCAACAGGCCAGAAACTTCTCTATCCAATGTGGTCTTGTATATGTTGCAGAACCTGGGTATATGCTACAGAGATCTGGAGTTCCTTGCCAT GCCATCATTAAGAAGTTTTCTGGTGTTGAGATATCACAACTAGAAGAACTAATCTCGGTTTTCTCTAAGCTATCAAGGGGTGCTCGAGTGCCATTGGAGT ATATAAGGCACAATGATCGTCATCGAGCGAAGTCTGTGATAGTCTGTATTGATCGCCATGAATGGTATGATGCTCCAAAGATATACACTCGGGATGATAG TTCGGGTTTATGGATAGCGAGGCCTGCTATTCAACCTAAGTTCCTGCCGCTGTCATCTTGTAGCAGTGATGCTGAACAACATCCAAAAATTCAATCTTTT TCATTATCTGGTGAATCTACTCTGGCAAAACATATGCATCAATCTAACAAACAGGAGTTGACAAATGGTGTTGCGAGGATAGAAGACAGTAATGGACATA TTTCTAAGGAAGCCCATTCTGGAGAAGAATACGATGCTAAAACTAAGGAGTGCCAAGAACAGGGGCATTTTTCTTCTAAGGAAATTGTCGCTGCCAACTG CTCTTCTCGTGAAATTGGAGAAATTAAATTGAAGGATCCAAGTACCACAGAAAAAACAGTGTTGAATGGCATTGAAACTGCAACTTCAACTGCTTCATTT GCAGAAAGTTTGATAGAGCCAGCTCTTGTCACGCTCGAGGTTGATGTCCCACCATCTTGTTTGCTTGATGGTGTCAAGTCAGTGGCGTCTTGTGGGACTG GTGTTATCGTTCATCATTCTCAATGTATGGGGTTGGTTGCAATTGACAAGAACACAGTTGAAATATCTGCATGCGATGTGATTCTATCATTTGCTGCATT TCCTATTCAAATCCCTGGGGAGGTTGTGTTTGTTCATCCAGTTTACAATTTTGCTCTTGTTGGTTATGACCCCTCTGCTCTTGGAGCTGATGGTGCTTCA ATGGTTCATGCTGCTGAACTACTTCCAGAGCCTGCACTATGTAGGGGAGATAGAGTGTATCTTGTTGGATTAAGTAAAAATCTACGAGCACAGTCTAGGA AATCTACTGTAACAAATCCATGTCTCGCCTTATATGTTCACCAAGTTGATCGTCCACGGTACGGAGCAACAAATATGGAAGTGATTGAACTTGATTCTGG TTTTGGCAGTGAATTCACCGGCGTGCTGTGTGATGAGCGTGGAAAGGTGCGGGCTATATGGGGGAGCTTTTCAAATCAGGATTATCAATTTGTTCGAGGT ATCCCAATATATATGATCAGCCAAATAGTTGACAGTATTGTATGTGGTGGAAATGGGCCATCTCTTCTCATAAATGGTGTCAAAAGGGGAATGCCACTTA TTAGGACTTTGGAGGTTTCACTTTGTCCCATGTTGCTTTCAGAGGCCCGGAATTTCGGTCTCAGCAATGATTGGATTCAAGCACTTGACGAGAAAGATCC AGTTAGACGACAAGTTTTGTGTGTAGAAGGTAGTTATGCTGGATCTAAAGCTGAGAACGTATTAAAACAAAGTGACATGTTGTTGGCAGTCAACAAAGAG TCAATTACTTGCTTCCGTGACATAGAAAATGCTTGTCAAGCATTAGAGGAGTGTGGTGGCAGTGATGGGAAGCTTAAAATAACCGTCTTTCGCCAGGGAT GTGAAGTCGATCTTCTTGTTGGAACAGATGTTAGGGATGGGAATGGCACCACACGAGCGATAAGTTGGTGTGGGTGTCTTGTTCAGGATTCTCATCCAGC AGTGCGTACTCTTGGATTTCTTCCTGATGAAGGTTATGGAGTATTTGTGACAAAGTGGTCTCTCGGAAGTCCTGCAGATAGATATTGTCTAAGTGCTCTT AAATGGATTGTTCAAGTCAATGGAAAACCAACTTCTGATTTAGATGCCTTTGCTAATGTGGTAAAGGAACTAGGACCTGATGAGTGTGTGCGTGTAAAGA CCGTTGACCTGGATGGGAAGCCACAAGTGCAAACACTAAAGCAGGATTTGCACTACTGGCCTACGTGGGAGTTGAGATTTGATCCAGACACCGCAATGTG GCGTAAGAATACAATAAATGCATTAGATTGCAGTAATGGATAA
AA sequence Show only first row Show all	>Potri.004G088700.1 pacid=42795133 polypeptide=Potri.004G088700.1.p locus=Potri.004G088700 ID=Potri.004G088700.1.v4.1 annot-version=v4.1 MGFQNDMPFLPEKEAFADDWAETVNKVVPAVVVLQTTTCRAFDTELPSSGSATGFVVDKQRGIILTNRHVVNPGPVNAQAIFVSNEETPLRPIYRDPVHD FGFFSYDPGAIQFLNYEEIPLAPEAASVGLEIRVIGNDSSEKVSILSGILARLDRNAPAYEKDGYNDFNTFYLQAASGTKPGSSGSPVIDKQGRAVALNA GSSSSSSSAFYLPLERVVRALRLLQKCKDARANKWETVSIPRGTLQVTFCHKGFDETRRLGLRSETEQMVRNASLLGETGMLVVDSVVPGGPAYGQLEPG DMLVSVDGELTTRFLKLETLLDDNVDQKIGLQIERGGISLTVNLTVQDLHTITPNHFLEVSGAVIHPLSYQQARNFSIQCGLVYVAEPGYMLQRSGVPCH AIIKKFSGVEISQLEELISVFSKLSRGARVPLEYIRHNDRHRAKSVIVCIDRHEWYDAPKIYTRDDSSGLWIARPAIQPKFLPLSSCSSDAEQHPKIQSF SLSGESTLAKHMHQSNKQELTNGVARIEDSNGHISKEAHSGEEYDAKTKECQEQGHFSSKEIVAANCSSREIGEIKLKDPSTTEKTVLNGIETATSTASF AESLIEPALVTLEVDVPPSCLLDGVKSVASCGTGVIVHHSQCMGLVAIDKNTVEISACDVILSFAAFPIQIPGEVVFVHPVYNFALVGYDPSALGADGAS MVHAAELLPEPALCRGDRVYLVGLSKNLRAQSRKSTVTNPCLALYVHQVDRPRYGATNMEVIELDSGFGSEFTGVLCDERGKVRAIWGSFSNQDYQFVRG IPIYMISQIVDSIVCGGNGPSLLINGVKRGMPLIRTLEVSLCPMLLSEARNFGLSNDWIQALDEKDPVRRQVLCVEGSYAGSKAENVLKQSDMLLAVNKE SITCFRDIENACQALEECGGSDGKLKITVFRQGCEVDLLVGTDVRDGNGTTRAISWCGCLVQDSHPAVRTLGFLPDEGYGVFVTKWSLGSPADRYCLSAL KWIVQVNGKPTSDLDAFANVVKELGPDECVRVKTVDLDGKPQVQTLKQDLHYWPTWELRFDPDTAMWRKNTINALDCSNG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.004G088700 [exp]	0	1
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.013G047950 [exp]	5.91	0.9200
AT4G01575			serine protease inhibitor, Kaz...		Potri.014G108800 [exp]	6.63	0.9015
AT3G45070			P-loop containing nucleoside t...		Potri.010G138450 [exp]	7.61	0.9085
AT5G42830			HXXXD-type acyl-transferase fa...		Potri.014G025600 [exp]	7.74	0.9000
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Potri.004G150400 [exp]	7.74	0.9004	Pt-CLB6.1
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.007G007900 [exp]	10.58	0.8985
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119900 [exp]	11.40	0.8973
AT2G36540			Haloacid dehalogenase-like hyd...		Potri.010G244200 [exp]	14.24	0.8792
AT3G45070			P-loop containing nucleoside t...		Potri.010G138501 [exp]	14.28	0.9049
AT5G45490			P-loop containing nucleoside t...		Potri.011G040800 [exp]	15.49	0.8501

Compare expression of checked genes

Potri.004G088700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.