Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03440 389 / 1e-133 ARM repeat superfamily protein (.1) AT4G12710 228 / 7e-71 ARM repeat superfamily protein (.1) AT5G14510 116 / 3e-29 ARM repeat superfamily protein (.1) AT2G23140 108 / 3e-25 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT4G16490 105 / 1e-24 ARM repeat superfamily protein (.1) AT5G67340 100 / 7e-23 ARM repeat superfamily protein (.1) AT3G01400 96 / 1e-21 ARM repeat superfamily protein (.1) AT1G67530 94 / 2e-20 ARM repeat superfamily protein (.1.2) AT1G24330 93 / 3e-20 ARM repeat superfamily protein (.1) AT2G25130 86 / 3e-18 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G128100 [exp] 542 / 0 AT3G03440 380 / 2e-130 ARM repeat superfamily protein (.1) Potri.014G170100 [exp] 258 / 7e-83 AT4G12710 422 / 3e-147 ARM repeat superfamily protein (.1) Potri.001G344200 [exp] 145 / 3e-40 AT5G14510 310 / 5e-105 ARM repeat superfamily protein (.1) Potri.016G010800 [exp] 112 / 5e-27 AT4G16490 521 / 0.0 ARM repeat superfamily protein (.1) Potri.005G144700 [exp] 106 / 9e-25 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G225400 [exp] 105 / 2e-24 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.007G051000 [exp] 105 / 3e-24 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.006G015100 [exp] 103 / 4e-24 AT4G16490 509 / 1e-178 ARM repeat superfamily protein (.1) Potri.002G037700 [exp] 103 / 1e-23 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033593 [exp] 460 / 7e-161 AT3G03440 395 / 4e-135 ARM repeat superfamily protein (.1) Lus10017635 [exp] 445 / 6e-156 AT3G03440 409 / 2e-141 ARM repeat superfamily protein (.1) Lus10041090 [exp] 228 / 3e-71 AT4G12710 411 / 5e-143 ARM repeat superfamily protein (.1) Lus10036415 [exp] 224 / 3e-65 AT2G04280 828 / 0.0 unknown protein Lus10002521 [exp] 126 / 8e-33 AT5G14510 281 / 1e-93 ARM repeat superfamily protein (.1) Lus10022275 [exp] 115 / 5e-29 AT5G14510 290 / 1e-96 ARM repeat superfamily protein (.1) Lus10039047 [exp] 107 / 2e-25 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10024899 [exp] 106 / 1e-24 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 103 / 9e-24 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10010499 [exp] 101 / 3e-23 AT4G16490 608 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF04826 [poplar] [flax] Arm_2 Armadillo-like
Representative CDS sequence Show only first row Show all	>Potri.004G088800.1 pacid=42796477 polypeptide=Potri.004G088800.1.p locus=Potri.004G088800 ID=Potri.004G088800.1.v4.1 annot-version=v4.1 ATGAACTCCCCCCCCTCCTCCTGCTCCTCCGCACTCACTCACTCCACCTCTTCTTCCAACACCGACACGCCACCCTCCCCCTCCGCCGCAGTCTGCCGTG CGCTACTATTAATCCAATCTGATGATTTGAGTTTGAAAATAGAAGCGGCGAAGGAGATAAGAAGGTTAACCAAAACTTCTCAGAGGTGCAGGAGGCAGTT AGCTGATGCTGTTAAGCCACTGGTTTGTATGTTACGAGTTGGTGATGATGACTCCGTTGAGAACGAGTCGGCTCTCTTGGCTTTGCTTAATCTTGCTGTT AAAGATGAGAAGAACAAAATCAGCATTGTGGAAGCTGGAGCTTTAGAATCCATAATTAGCTTCCTTCAGTCACAAAATTCAATCTTGCAGGAGTATGCAA CTGCATCTCTTCTCACTCTATCTGCCTCTACCATTAACAAGCCAGTTATAAGTGCTTGTGGTGCCATTCCTCTCCTTGTTGAAATCCTCAGAAATGGCAT CACACAAGCCAAAGTGGATGCTGTAATGGCTCTTTCAAATCTTTCAACACACTCCGATAATCTTGACATAATTCTCAAAACAAATCCAATCCCTTCCATA GTTAGTTTACTAAAAACCTGTAAAAAATCTTCAAAAACAGCAGAAAAATGCTGTGCTCTCATAGAATCTTTAGTTGGTTTTGACGAAGGTAGAATTGCAT TAACATCTGAAGAAGGTGGAATCCTAGCTGTTATTGAAGTGCTTGAAAATGGCTCTCTCCAAAGTCGAGAGCATGCAGTTGGGGCATTGCTAACCTTGTG TCAGAGTGATCGTTGTAAATATAGAGAACCAATTCTCAGAGAAGGTGTGATCCCTGGACTACTTGAGCTTACTGTTCAAGGAACACCCAAGTCTCAGTCA AAAGCTCAAACACTGTTACGCTTGCTGAGAGACACTCCATACCCAAGATCTGAACTTCAACCAGACACATTAGAGAACATTGTGTGCAACATCATCTCCC AGATAGATGGAGATGAACAATCTGGTAAAGCAAAGAAGATGCTTGCTGAGATGGTGCAAGTTAGCATGGAACAGAGCTTGAGACATCTACAACAAAGGGC TTTGGTATGTACACCTACGCCAAATGACCTTCCTATCAGTAGTTGCACTTCTGAAGTATCTTCAAAATGA
AA sequence Show only first row Show all	>Potri.004G088800.1 pacid=42796477 polypeptide=Potri.004G088800.1.p locus=Potri.004G088800 ID=Potri.004G088800.1.v4.1 annot-version=v4.1 MNSPPSSCSSALTHSTSSSNTDTPPSPSAAVCRALLLIQSDDLSLKIEAAKEIRRLTKTSQRCRRQLADAVKPLVCMLRVGDDDSVENESALLALLNLAV KDEKNKISIVEAGALESIISFLQSQNSILQEYATASLLTLSASTINKPVISACGAIPLLVEILRNGITQAKVDAVMALSNLSTHSDNLDIILKTNPIPSI VSLLKTCKKSSKTAEKCCALIESLVGFDEGRIALTSEEGGILAVIEVLENGSLQSREHAVGALLTLCQSDRCKYREPILREGVIPGLLELTVQGTPKSQS KAQTLLRLLRDTPYPRSELQPDTLENIVCNIISQIDGDEQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPTPNDLPISSCTSEVSSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03440			ARM repeat superfamily protein...		Potri.004G088800 [exp]	0	1
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Potri.007G032500 [exp]	1.00	0.7386
AT1G05690		BT3	BTB and TAZ domain protein 3 (...		Potri.007G140400 [exp]	2.82	0.7302
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Potri.013G130400 [exp]	6.92	0.7074
AT5G67170			SEC-C motif-containing protein...		Potri.005G140500 [exp]	13.41	0.6652
AT1G12020			unknown protein		Potri.004G001800 [exp]	15.96	0.6184
AT1G32740			SBP (S-ribonuclease binding pr...		Potri.001G148600 [exp]	16.58	0.6050
AT4G25670			unknown protein		Potri.004G079900 [exp]	17.43	0.6827
AT1G12760			Zinc finger, C3HC4 type (RING ...		Potri.003G123300 [exp]	19.89	0.6643
AT5G48385			FRIGIDA-like protein (.1)		Potri.014G175200 [exp]	24.95	0.6568
AT5G20650		COPT5	copper transporter 5 (.1)		Potri.006G219200 [exp]	27.33	0.5408

Compare expression of checked genes

Potri.004G088800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.