Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37800 199 / 9e-62 bHLH ATRSL1, bHLH086 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) AT1G66470 187 / 4e-57 bHLH AtRHD6, RHD6, bHLH083 ROOT HAIR DEFECTIVE6 (.1) AT4G33880 97 / 2e-22 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT2G14760 96 / 3e-22 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G27740 92 / 1e-21 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT5G43175 90 / 5e-21 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G24260 86 / 1e-18 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 84 / 4e-18 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 75 / 4e-15 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT5G01310 74 / 3e-14 bHLH APTX, bHLH140 APRATAXIN-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G126800 [exp] 482 / 2e-172 AT5G37800 203 / 3e-63 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) Potri.001G294300 [exp] 95 / 7e-22 AT4G33880 164 / 2e-47 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Potri.014G017100 [exp] 95 / 7e-22 AT2G14760 179 / 2e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.009G089000 [exp] 95 / 8e-22 AT2G14760 173 / 5e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G119200 [exp] 94 / 2e-21 AT4G33880 186 / 3e-55 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Potri.007G044600 [exp] 77 / 5e-16 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G120800 [exp] 74 / 7e-16 AT5G01310 109 / 3e-28 APRATAXIN-like (.1) Potri.006G186600 [exp] 78 / 8e-16 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.018G109500 [exp] 78 / 1e-15 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017634 [exp] 176 / 4e-53 AT1G66470 171 / 2e-51 ROOT HAIR DEFECTIVE6 (.1) Lus10033592 [exp] 176 / 5e-53 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1) Lus10001068 [exp] 95 / 9e-22 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10004315 [exp] 94 / 2e-21 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10002213 [exp] 77 / 1e-16 AT5G01310 108 / 8e-28 APRATAXIN-like (.1) Lus10033488 [exp] 75 / 1e-15 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021846 [exp] 77 / 2e-15 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10005710 [exp] 74 / 8e-15 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003386 [exp] 75 / 1e-14 AT5G01310 107 / 1e-24 APRATAXIN-like (.1) Lus10042647 [exp] 73 / 1e-14 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G088900.1 pacid=42796578 polypeptide=Potri.004G088900.1.p locus=Potri.004G088900 ID=Potri.004G088900.1.v4.1 annot-version=v4.1 ATGGCACTTGCCAAGGACCGTATGGGATCGGTTCAAACTTGCCCCTATAATGGAAATGTGATGGGGGATTTTTCCTCCATGGGGTCTTACGGATTTGATG AATATCAGAAGGTAGCATTTTATGAAGAGGGAAATAGCACCTTTGAGAAAACCAGTGGGCTTATGATCAAGAATTTAGCTATGACCTCTTCTCCTTCTTC TCTTGGCAGTCCGAGCAGCGCGATTTCTGGTGAATTAGTGTTTCAGGCTACTGACCATCAAGCTGAGGAAGCTCATTCTTTGATCAGCTTCAAAGGTATC GGATTCGATAACATCATGCATAATAATGGATCTTTGCTTAGCTTTGAGCAAAGTAGTAGGGTTTCTCAAACTAGTAGCCAGAAAGATGACTACTCAGCCT GGGAGGGTAATTTGAGTTACAACTACCAGTGGAACGAAATGAATCCAAAATGTAACACAAGTCCTCGGTTGATGGAAGATTTTAATTGCTTTCAAAGAGC TGGCAACTTCATTTCCATGACTGGAAAGGAAAATCATGGTGATTGGTTATACGCTGAATCCACAATTGTTGCTGATAGCATTCAGGATTCTGCAACACCA GATGCCAGCAGCTTCCATAAGCGTCCTAATATGGGAGAGAGTATGCAGGCTCTAAAGAAGCAATGCAACAATGCAACAAAAAAGCCAAAACCGAAGTCCG CAGCAGGTCCAGCTAAGGATCTACAGAGTATTGCTGCCAAGAATCGACGAGAGAGGATTAGCGAGAGGCTTAAGGTATTGCAGGATTTAGTCCCTAATGG CTCAAAGGTTGATTTGGTTACTATGCTAGAGAAAGCCATTAGTTATGTTAAGTTTCTTCAATTGCAAGTAAAGGTGTTAGCCACTGATGAATTATGGCCA GTTCAAGGTGGTAAAGCTCCTGATATTTCTCAAGTAAAGGAAGCCATCGATGCCCTACTCTCATCTCAGACTAAAGACGGAAACTCAAGCTCAAGCCCAA AGTAA
AA sequence Show only first row Show all	>Potri.004G088900.1 pacid=42796578 polypeptide=Potri.004G088900.1.p locus=Potri.004G088900 ID=Potri.004G088900.1.v4.1 annot-version=v4.1 MALAKDRMGSVQTCPYNGNVMGDFSSMGSYGFDEYQKVAFYEEGNSTFEKTSGLMIKNLAMTSSPSSLGSPSSAISGELVFQATDHQAEEAHSLISFKGI GFDNIMHNNGSLLSFEQSSRVSQTSSQKDDYSAWEGNLSYNYQWNEMNPKCNTSPRLMEDFNCFQRAGNFISMTGKENHGDWLYAESTIVADSIQDSATP DASSFHKRPNMGESMQALKKQCNNATKKPKPKSAAGPAKDLQSIAAKNRRERISERLKVLQDLVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDELWP VQGGKAPDISQVKEAIDALLSSQTKDGNSSSSPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37800	bHLH	ATRSL1, bHLH086	ARABIDOPSIS THALIANA RHD SIX-L...		Potri.004G088900 [exp]	0	1
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.005G232650 [exp]	22.89	0.7142
					Potri.001G190450 [exp]	33.70	0.5920
AT5G03980			SGNH hydrolase-type esterase s...		Potri.005G025000 [exp]	34.33	0.7142
AT5G62550			unknown protein		Potri.016G129250 [exp]	36.19	0.7142
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Potri.015G101700 [exp]	38.96	0.7129
AT5G02070			Protein kinase family protein ...		Potri.013G011700 [exp]	41.71	0.7112
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.003G202200 [exp]	43.71	0.7102
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Potri.012G082800 [exp]	48.37	0.6950
AT4G33467			unknown protein		Potri.005G058800 [exp]	48.49	0.6664
AT4G22080		RHS14	root hair specific 14 (.1)		Potri.004G007300 [exp]	49.59	0.6070

Compare expression of checked genes

Potri.004G088900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.