Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37790 666 / 0 Protein kinase superfamily protein (.1) AT1G66460 627 / 0 Protein kinase superfamily protein (.1) AT1G77280 272 / 2e-82 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 254 / 7e-79 Protein kinase superfamily protein (.1.2.3) AT1G21590 254 / 7e-76 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G16750 250 / 2e-75 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G63940 247 / 1e-73 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G18890 220 / 1e-66 Protein kinase superfamily protein (.1.2) AT5G13160 218 / 6e-65 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G65530 218 / 7e-65 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G126500 [exp] 944 / 0 AT5G37790 658 / 0.0 Protein kinase superfamily protein (.1) Potri.007G102400 [exp] 254 / 3e-76 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 251 / 1e-74 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 249 / 1e-74 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 248 / 4e-74 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 246 / 2e-73 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 245 / 3e-72 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.002G077900 [exp] 239 / 1e-70 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G173700 [exp] 234 / 9e-70 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009125 [exp] 672 / 0 AT5G37790 607 / 0.0 Protein kinase superfamily protein (.1) Lus10033588 [exp] 672 / 0 AT5G37790 591 / 0.0 Protein kinase superfamily protein (.1) Lus10017631 [exp] 660 / 0 AT5G37790 601 / 0.0 Protein kinase superfamily protein (.1) Lus10028518 [exp] 653 / 0 AT5G37790 592 / 0.0 Protein kinase superfamily protein (.1) Lus10000968 [exp] 260 / 5e-78 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10028661 [exp] 258 / 2e-77 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10013566 [exp] 230 / 6e-69 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10024154 [exp] 233 / 3e-68 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019990 [exp] 229 / 1e-67 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2) Lus10006957 [exp] 221 / 2e-67 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G089100.1 pacid=42795443 polypeptide=Potri.004G089100.1.p locus=Potri.004G089100 ID=Potri.004G089100.1.v4.1 annot-version=v4.1 ATGGGGTTCCTTGAAGGTTCTTGTTTAAACACAGAAGAGCCACCAAATAGCTCTACTAGTGATGCTCTGTCCACTGCTACTTTCAGAGCCAAAGACCAAT ACTTTGAGCATCATTATGAGCGAAAAATGAAAGCTTTTTTGTCAAAAATGTTTTGGCAATTTGGTTTGGCCTGTTTTGTGCCAAATGAGAGTGATGAAAC CAGTAAGGGAAGTAATAAGAAGAACGCAGATTTAGAGCACAACAAGGCATGGTTGTTGGCAGAGTCTGGTGGCTGTGGTGGTGCAGAGTTAACAAATGCT GATCCACAATCAGTTCACTCTTCTTTCAGGTTCAGTTTATGCTCTCAAGTTGAGCTTGAGTCAATGAACATGAATTCTTCAGCTACTGTTTTGATGGTGA ATTTGGACAATGGATTGAATGAGACTAGAGCTAAAGAGCTTAAATGGAGGAGAATTCAGTCGCTTGAGAGAAGTATCTCTCCAGTTGCAAATTCTTTGGT CAGATTCAGTTATAGGGAAATTCTTGCTGCTACTAATAATTTCTCAAAAGGTAGAGTTTTGGGAAGGGGAGCTTTGAGCTTTGTCTTTAGAGGTAAAGTT GGGTTCTTGAGGACTGCTGTGGCAATTAAGAGATTAGACAAGGAGGATAAAGAGGCTTCAAAGGCATTCTGTAGAGAATTAATGATTGCTAGTTCTCTTT ACCACTCAAATATTGTGCCTCTTGTCGGGTTCTGTATTGATCCAGATGAGGGCTTGTTCTTGGTGTACAGATATGTATCTGGTGGCAGCTTAGAGCGCCA TTTGCACGATAAGAAGAAAGGGAAGGGAGGAGTTAAGGGTTCTTCAGGCCTTCCCTGGTCTGTGAGATATAAGGTTGCACTTGGAATTGCACAAGCAATT GCATATTTGCATAATGGAACTGAAAGATGTGTTGTTCATAGAGATATTAAACCCTCAAATATACTCCTTTCTTCCAAGAAAGTTCCGAAGTTGTGTGATT TTGGTTTGGCTACTTGGACTTCTGCACCTTCAGTCCCTTTCCTTTGTAAAACTGTCAAGGGAACATTTGGCTACTTGGCTCCTGAGTATTTCCAGCATGG GAAAATATCCGATAAGACCGATGTGTATGCTTTTGGTGTGGTCCTTTTGGAACTAATTTCTGGAAGGAAGCCAATTGAAGCAAGGAAGCCACTGAGGGAA GAGAATTTGGTCCTATGGGCTAAACCCCTGTTGCAGAAGGGAAATGAAGCCATTGAGGAGTTGCTTGATCCACGACTTAAATGCACTTTGAGAAATACAA CTCAAATAACCCACATGATCCAGGCTGCCACTGCCTGCATAAGCAATGAAGAATCTCGAAGACCAGGAATAGACGAAATTATTGGCATATTGAGAGGTGA AGAACAACCAATCTACTCAAATAGGAAGAAATCCAATTTTTCCGGGATTATAGATTGTTACCCTCAACTACAGCAGACAAAAAGTGAGATGAATAGTCAC TTAGCTTTGGCTATGTTAGGAGTTTCAGAATTTGAGGATGATGACCACCTTTATTGTCGTTAA
AA sequence Show only first row Show all	>Potri.004G089100.1 pacid=42795443 polypeptide=Potri.004G089100.1.p locus=Potri.004G089100 ID=Potri.004G089100.1.v4.1 annot-version=v4.1 MGFLEGSCLNTEEPPNSSTSDALSTATFRAKDQYFEHHYERKMKAFLSKMFWQFGLACFVPNESDETSKGSNKKNADLEHNKAWLLAESGGCGGAELTNA DPQSVHSSFRFSLCSQVELESMNMNSSATVLMVNLDNGLNETRAKELKWRRIQSLERSISPVANSLVRFSYREILAATNNFSKGRVLGRGALSFVFRGKV GFLRTAVAIKRLDKEDKEASKAFCRELMIASSLYHSNIVPLVGFCIDPDEGLFLVYRYVSGGSLERHLHDKKKGKGGVKGSSGLPWSVRYKVALGIAQAI AYLHNGTERCVVHRDIKPSNILLSSKKVPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKISDKTDVYAFGVVLLELISGRKPIEARKPLRE ENLVLWAKPLLQKGNEAIEELLDPRLKCTLRNTTQITHMIQAATACISNEESRRPGIDEIIGILRGEEQPIYSNRKKSNFSGIIDCYPQLQQTKSEMNSH LALAMLGVSEFEDDDHLYCR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37790			Protein kinase superfamily pro...		Potri.004G089100 [exp]	0	1
AT2G36020		HVA22J	HVA22-like protein J (.1)		Potri.006G205300 [exp]	7.93	0.8514
AT2G02240		MEE66	maternal effect embryo arrest ...		Potri.018G015800 [exp]	11.66	0.8493
AT2G20560			DNAJ heat shock family protein...		Potri.007G135900 [exp]	13.41	0.8247
AT3G27027			Protein of unknown function (D...		Potri.001G328701 [exp]	16.30	0.8266
AT3G25560		NIK2	NSP-interacting kinase 2 (.1.2...		Potri.010G134100 [exp]	20.49	0.8402
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191200 [exp]	22.97	0.8439
AT2G27140			HSP20-like chaperones superfam...		Potri.009G153200 [exp]	24.65	0.8421
AT1G75260			oxidoreductases, acting on NAD...		Potri.005G228400 [exp]	26.36	0.8408
AT1G53470		MSL4	mechanosensitive channel of sm...		Potri.005G246600 [exp]	28.37	0.8135
AT5G57130			Clp amino terminal domain-cont...		Potri.018G140900 [exp]	29.83	0.8321

Compare expression of checked genes

Potri.004G089100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.