Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66430 527 / 0 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 436 / 2e-153 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 389 / 6e-135 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 388 / 1e-134 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 384 / 5e-133 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 382 / 3e-132 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 379 / 4e-131 STH pfkB-like carbohydrate kinase family protein (.1) AT1G50390 159 / 8e-48 pfkB-like carbohydrate kinase family protein (.1) AT3G54090 145 / 6e-39 FLN1 fructokinase-like 1 (.1) AT1G69200 135 / 8e-35 FLN2 fructokinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G126300 [exp] 638 / 0 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 429 / 9e-151 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 423 / 3e-148 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 384 / 1e-132 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 383 / 1e-132 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 378 / 7e-131 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.008G097300 [exp] 145 / 2e-38 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.016G109600 [exp] 121 / 2e-30 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.014G074125 [exp] 80 / 3e-18 AT5G51830 80 / 7e-19 pfkB-like carbohydrate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009126 [exp] 542 / 0 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 525 / 0 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 434 / 2e-152 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 432 / 7e-152 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 386 / 6e-134 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 386 / 1e-133 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 384 / 8e-133 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10040562 [exp] 380 / 7e-132 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 354 / 6e-122 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Lus10020346 [exp] 320 / 6e-109 AT3G59480 441 / 8e-158 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [poplar] [flax] Ribokinase PF00294 [poplar] [flax] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Potri.004G089300.2 pacid=42793765 polypeptide=Potri.004G089300.2.p locus=Potri.004G089300 ID=Potri.004G089300.2.v4.1 annot-version=v4.1 ATGGCTGCTCTCCACTCTACTGCTTTTTGTTTCGGTGGTGTGGCTTTGTCTTCTCGTCAAGAACTTTGTTTCAGACGTGGGAATGTTAAAGCCTCAACTT TTTCCTGCCCCCCTTTGGTTTCCATTCCTCGATTGAGCTTCCAAAGTAAAGCATTCGGAGGTGATGGGTCACCAGAAACGAAAGACTCCTCTCTTGTGGT TTGTTTTGGGGAAATGCTAATTGACTTTGTCCCAACCATTAGTGGACTTTCATTGTCTGATGCACCGGCATTTAAGAAGGCTCCAGGAGGTGCGCCTGCT AATGTTGCTGTTGGTATTGCTCGACTTGGTGGCTCGTCGGCATTTATAGGGAAGGTTGGTGAAGATGAGTTTGGATACATGCTCGCGGAAATATTAAAGG AGAATAATGTGAACAATGAAGGGATGCGTTTCGATCCTGGTGCAAGGACTGCTTTAGCTTTTGTTACATTAAGAAGTGACGGGGAACGTGAATTCATGTT TTACCGTAATCCTAGTGCAGATATGTTACTTAAAGAAGCTGAACTTGATTTAGATTTGATTAGAAAGGCAAAAATATTTCATTATGGCTCCATAAGTCTT ATAACAGAGCCATGCAAATCAGCCCACATTGCAGCAGCAAAAGTTGCTAAGGATGCAGGTGTTTTTTTGTCCTACGATCCTAACCTGAGGCTTCCACTAT GGCCTTCTGCTGAGAGTGCCAGAGAAGGGATTCTGAGCATTTGGGACACTGCTGATATTATCAAGATAAGTGAAGAAGAGATATCTTTCTTGACTAAAGG AGAAGATCCATATGATGATGCTGTTGTTCAGAAGCTATTCCATCCAAATCTTAAATTGCTTCTTGTCACCGAGGGACCGGAGGGCTGCAGGTATTACACC AAAGAGTTCAGTGGGAGAGTGAAGGGTTTAAAGGTGGATGCTGTGGACACCACTGGTGCTGGGGATGCTTTTGTTGCTGGAATATTGTCACAACTAGCTA TGGATCTCTCCTTGCTCCAGAATGAGGACCGATTGAGAGAAGCTCTCAAGTTTGCGAATGCCTGTGGTGCATTGACTGTGAAGGAGAGAGGTGCCATTCC AGCTTTGCCAACCAGAGAAGCTGTGAACAGTGCCATCATTCAGCTTGTTAGATAG
AA sequence Show only first row Show all	>Potri.004G089300.2 pacid=42793765 polypeptide=Potri.004G089300.2.p locus=Potri.004G089300 ID=Potri.004G089300.2.v4.1 annot-version=v4.1 MAALHSTAFCFGGVALSSRQELCFRRGNVKASTFSCPPLVSIPRLSFQSKAFGGDGSPETKDSSLVVCFGEMLIDFVPTISGLSLSDAPAFKKAPGGAPA NVAVGIARLGGSSAFIGKVGEDEFGYMLAEILKENNVNNEGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLKEAELDLDLIRKAKIFHYGSISL ITEPCKSAHIAAAKVAKDAGVFLSYDPNLRLPLWPSAESAREGILSIWDTADIIKISEEEISFLTKGEDPYDDAVVQKLFHPNLKLLLVTEGPEGCRYYT KEFSGRVKGLKVDAVDTTGAGDAFVAGILSQLAMDLSLLQNEDRLREALKFANACGALTVKERGAIPALPTREAVNSAIIQLVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66430			pfkB-like carbohydrate kinase ...		Potri.004G089300 [exp]	0	1
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Potri.018G065800 [exp]	5.83	0.6954	ORG4.2
AT2G04740			ankyrin repeat family protein ...		Potri.014G163200 [exp]	12.00	0.6282
AT2G33255			Haloacid dehalogenase-like hyd...		Potri.010G063700 [exp]	17.66	0.6607
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.008G125100 [exp]	18.00	0.5517
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Potri.005G121700 [exp]	26.07	0.5926
AT3G56130			biotin/lipoyl attachment domai...		Potri.010G183200 [exp]	27.03	0.5875
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Potri.017G119500 [exp]	30.03	0.5912
AT4G03150			unknown protein		Potri.014G135400 [exp]	39.23	0.6186
AT5G04520			Protein of unknown function DU...		Potri.010G233000 [exp]	41.95	0.6368
AT5G47840		AMK2	adenosine monophosphate kinase...		Potri.019G078200 [exp]	42.05	0.5646

Compare expression of checked genes

Potri.004G089300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.