Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37730 108 / 2e-30 unknown protein AT1G70780 104 / 3e-29 unknown protein AT1G23150 101 / 5e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125300 [exp] 186 / 2e-61 AT1G70780 109 / 2e-31 unknown protein Potri.010G110800 [exp] 124 / 2e-37 AT1G70780 188 / 9e-63 unknown protein Potri.008G131600 [exp] 123 / 9e-37 AT1G70780 183 / 2e-60 unknown protein Potri.003G116300 [exp] 47 / 5e-07 AT2G27830 125 / 2e-36 unknown protein Potri.004G188600 [exp] 47 / 5e-07 AT2G27830 160 / 5e-50 unknown protein Potri.009G149200 [exp] 43 / 2e-05 AT2G27830 183 / 6e-59 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017628 [exp] 115 / 8e-34 AT5G37730 102 / 3e-28 unknown protein Lus10034416 [exp] 112 / 4e-32 AT1G70780 168 / 8e-55 unknown protein Lus10019143 [exp] 110 / 2e-31 AT1G70780 167 / 4e-54 unknown protein Lus10031920 [exp] 109 / 3e-31 AT1G70780 172 / 4e-56 unknown protein Lus10035084 [exp] 104 / 3e-29 AT1G70780 171 / 7e-56 unknown protein Lus10027525 [exp] 99 / 6e-27 AT1G70780 104 / 3e-29 unknown protein Lus10039287 [exp] 96 / 1e-25 AT1G70780 104 / 4e-29 unknown protein Lus10009131 [exp] 81 / 1e-19 AT1G70780 92 / 1e-24 unknown protein Lus10033584 [exp] 54 / 5e-10 AT5G37730 78 / 2e-19 unknown protein Lus10020544 [exp] 43 / 2e-05 AT2G27830 181 / 3e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G089700.1 pacid=42795167 polypeptide=Potri.004G089700.1.p locus=Potri.004G089700 ID=Potri.004G089700.1.v4.1 annot-version=v4.1 ATGGAAAAGATGAAGAGAAATGTGAGCGAGAAAATGATGTTAAAAAAGCAGATAAAGAATAAGAAAGGTGATGACAAAAAGAATAGGTTCTTGGTAAGTG TCAATTTTCTTGGGAGTGCAGGGCCTATAAGGTTTGTGGTTAATGGGGATGATCTTGTTTCTGGGGTCATTGACACTGCTTTGAAGACGTATGCCCGTGG AGGCCGGCTCCCAGTTCTTGGCTTTGATGTCAATAAATTCCTTCTCTACTGTGCTAATCCACCTTCAGATGCGTTGAATCCACGGGAGCCAATAGGTTCC CAAGAGGGAAGGAATTTTGTGCTGTGCAAGAAACAGCTGCAACCACAAATGACGGAAATGAGATCAGACATCGTAGCTAAAAAACCATCTGGGTGGAAGG CATTGATGACTGCATTTCTCCCCATATGGGGATTGGTTGGAAATAATGGAACAAGTTGA
AA sequence Show only first row Show all	>Potri.004G089700.1 pacid=42795167 polypeptide=Potri.004G089700.1.p locus=Potri.004G089700 ID=Potri.004G089700.1.v4.1 annot-version=v4.1 MEKMKRNVSEKMMLKKQIKNKKGDDKKNRFLVSVNFLGSAGPIRFVVNGDDLVSGVIDTALKTYARGGRLPVLGFDVNKFLLYCANPPSDALNPREPIGS QEGRNFVLCKKQLQPQMTEMRSDIVAKKPSGWKALMTAFLPIWGLVGNNGTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37730			unknown protein		Potri.004G089700 [exp]	0	1
AT1G08920		ESL1	ERD (early response to dehydra...		Potri.005G039900 [exp]	1.00	0.7940
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Potri.004G007700 [exp]	6.08	0.6311
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Potri.010G069000 [exp]	11.83	0.7128
AT5G10530			Concanavalin A-like lectin pro...		Potri.003G094700 [exp]	12.48	0.7004
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187500 [exp]	13.07	0.7113
AT1G78020			Protein of unknown function (D...		Potri.007G089200 [exp]	19.44	0.6268
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Potri.006G225100 [exp]	21.33	0.6330
AT1G67550		URE	urease (.1)		Potri.008G177900 [exp]	23.57	0.7050
AT2G18890			Protein kinase superfamily pro...		Potri.018G091200 [exp]	31.40	0.6336
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.007G120900 [exp]	32.24	0.6705

Compare expression of checked genes

Potri.004G089700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.