Plant FIBer expression Database

Potri.004G090200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27700 98 / 5e-23 Syntaxin/t-SNARE family protein (.1)
AT4G30240 91 / 2e-20 Syntaxin/t-SNARE family protein (.1)
AT2G18860 88 / 3e-19 Syntaxin/t-SNARE family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G125000
[exp]
625 / 0 AT1G27700 106 / 6e-26 Syntaxin/t-SNARE family protein (.1)
Potri.014G019100
[exp]
112 / 7e-28 AT1G27700 276 / 1e-91 Syntaxin/t-SNARE family protein (.1)
Potri.018G093400
[exp]
99 / 4e-23 AT4G30240 263 / 8e-87 Syntaxin/t-SNARE family protein (.1)
Potri.006G168800
[exp]
97 / 2e-22 AT4G30240 273 / 9e-91 Syntaxin/t-SNARE family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021360
[exp]
353 / 1e-119 AT4G30240 108 / 1e-26 Syntaxin/t-SNARE family protein (.1)
Lus10017038
[exp]
342 / 3e-115 AT4G30240 105 / 3e-25 Syntaxin/t-SNARE family protein (.1)
Lus10007766
[exp]
119 / 4e-30 AT1G27700 292 / 2e-98 Syntaxin/t-SNARE family protein (.1)
Lus10018703
[exp]
116 / 2e-29 AT1G27700 290 / 2e-97 Syntaxin/t-SNARE family protein (.1)
PFAM info
Representative CDS sequence
>Potri.004G090200.9 pacid=42794340 polypeptide=Potri.004G090200.9.p locus=Potri.004G090200 ID=Potri.004G090200.9.v4.1 annot-version=v4.1
ATGCTCGATAAAATGGCATCAAGTTTTCATGAATGGGAATCCGACCCTTTATTCTCAGCTGCTGAAGTAGTTCAAGACTCTTCTGACAGGATGGAATCAC
TTTTTCGTCTTGTATTGCATCAGCAAAGTCTCGTTCAAAGCGAACATCCTGACCCAAGATTCCTTTCATCGATAGAATATCATAAGCGTGATCTTGCAAC
CATACTTGGAACTGCGAAATGGCAGTTGGAAGATTTTGAAAGAGCTGCTAACTCATCGATCATAGCAAACAAATCTCAAACCAGAGAAGATGTCATTTCC
AGACATAGGCAGTTTATTATGGCCATTAGGGAACATATAAATGAAGTGGAGAAAGGTGTAAAGGGCCCTTCAATGGGTGATTCCATGAGAAACTCTGAAT
GGGTTAATTTAAATGACCATGAAAGAGATTTATTAGCATCATTTCTTACAGGAGGAAATCCCAAAGAACATTTAAATCATTATGAAATGGAAGAAAGTGG
CTATTTGAGAAGATTCCTTGATCCAAACTTGGGTTCTAGTTTAACAGATAATGAAATTGTTGAACATGACAGCAGAGAATTTGAGAGGGTAAGAATTAAT
GGAGTTGGGCATGCTGAGCATTATCTTGACTCTGCAAATGAAGATAAAAGAAATATTGGTTCGCATTACACCACCAGATTAGGCTCAGATATGATGAACT
CTCTGCCAGAGAACTCTCATGAAAGGCATGGTGGTGGTGATCACTGGGACCTAAAAGCCAATGAAGCCAAATCTAGGAGCTTCTTCCATGAGATCAAGTC
AAGAGGGACATACAGCATTATGTTCTTTGGTTTCTTGATCAATCTATGGTCTACCCATAGGAACAGAATTGCAAGGAACTATACAAAGAGGTTGAAAGAT
GGAGAAGAAAATAGGCATTCGCCTACTTACACTGAACCTTCTCATTCTGCACAGGTCCAGCGTCTAGGACTAATGTTAGGATCTGGATACAGAAGCTTCC
AGGGAATATGCTTTAGGTTGCAATCAGAAGTAATGCTCCTGGGCAGCTACCTTGGTGCAAGATATCAAAGATTTCCCTTTAATTTCGAGTTTAATGGACA
TTCAATGAAAATTATATTGACAACAATTCTTACCCTCATATTTTTGGGTATATTGGTGTCCAGAATTGCTTGA
AA sequence
>Potri.004G090200.9 pacid=42794340 polypeptide=Potri.004G090200.9.p locus=Potri.004G090200 ID=Potri.004G090200.9.v4.1 annot-version=v4.1
MLDKMASSFHEWESDPLFSAAEVVQDSSDRMESLFRLVLHQQSLVQSEHPDPRFLSSIEYHKRDLATILGTAKWQLEDFERAANSSIIANKSQTREDVIS
RHRQFIMAIREHINEVEKGVKGPSMGDSMRNSEWVNLNDHERDLLASFLTGGNPKEHLNHYEMEESGYLRRFLDPNLGSSLTDNEIVEHDSREFERVRIN
GVGHAEHYLDSANEDKRNIGSHYTTRLGSDMMNSLPENSHERHGGGDHWDLKANEAKSRSFFHEIKSRGTYSIMFFGFLINLWSTHRNRIARNYTKRLKD
GEENRHSPTYTEPSHSAQVQRLGLMLGSGYRSFQGICFRLQSEVMLLGSYLGARYQRFPFNFEFNGHSMKIILTTILTLIFLGILVSRIA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G27700 Syntaxin/t-SNARE family protei... Potri.004G090200
[exp]
0 1
AT4G20020 unknown protein Potri.004G218800
[exp]
3.46 0.8955
AT1G68930 pentatricopeptide (PPR) repeat... Potri.010G136200
[exp]
6.70 0.8972
AT5G43740 Disease resistance protein (CC... Potri.001G432200
[exp]
7.21 0.8789
AT5G05800 unknown protein Potri.014G091925
[exp]
7.34 0.8589
AT5G60040 NRPC1 nuclear RNA polymerase C1 (.1.... Potri.001G341900
[exp]
7.74 0.8915
Potri.018G077100
[exp]
9.48 0.8835
AT5G39680 EMB2744 EMBRYO DEFECTIVE 2744, Pentatr... Potri.017G084900
[exp]
9.79 0.8880
AT3G18840 Tetratricopeptide repeat (TPR)... Potri.009G113500
[exp]
10.72 0.8944
AT5G13960 SDG33, KYP, SUV... SET DOMAIN PROTEIN 33, KRYPTON... Potri.002G237950
[exp]
11.40 0.8154
AT5G55840 Pentatricopeptide repeat (PPR)... Potri.001G368700
[exp]
13.49 0.8639

Potri.004G090200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.