Plant FIBer expression Database

Potri.004G090400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03900 640 / 0 Iron-sulphur cluster biosynthesis family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017039
[exp]
648 / 0 AT5G03900 665 / 0.0 Iron-sulphur cluster biosynthesis family protein (.1.2)
Lus10021361
[exp]
629 / 0 AT5G03900 650 / 0.0 Iron-sulphur cluster biosynthesis family protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.004G090400.1 pacid=42795416 polypeptide=Potri.004G090400.1.p locus=Potri.004G090400 ID=Potri.004G090400.1.v4.1 annot-version=v4.1
ATGGCTTCAATATCCACCCCCCTTTCATATTCCCCTTCACCTGTCCGTCTCAAACCACCTGTCCGTCTCAAACCACCTGATTCCTTGCTCCTCAGAACCC
AAACACTCCATAAACTTTCCTTCAAATCTCCAAACCCTAAGACCCCCATTGGATTTTCTGTCAAAGCAACCGCTGATGTTACAAAAACCATGGGAATTAG
GCCTGGAAGTGTTGTGGAGACTGATAAGTTACCTTCTGATGTCAGAAACCGTGCCATGGAAGCTGTTGATGCGTGTGGTGGTAGGGTTACTATTGGTGAT
GTTGCCAGTAGAGCTGGGCTTAAGTTGAATGAAGCTCAAAAGGCCCTTCAAGCTCTCGCTTCTGATACTGATGGGTTTTTAGAGGTTTCGGATGAAGGTG
ATGTGCTTTATGTTTTTCCAAAGGATTATCGCTCAAAGCTTGCTGCAAAGTCATTAAGGCTAAAATTTGAACCTTTATTTGAGAAGGGAAAGGCTGCAGC
TGAGTATCTCATCAGGGTTTCTTTTGGGACAGCTCTAATTGCTTCAATAGTGATTGTTTATACCACAATAATTGCTATTCTTTCAAGTAGTCGTGATGAA
AATGATCGTGGAAGACGAAGAAGCAGATCCTTTGATACAGGATTTGCGTTTTACTTAAGTCCTACCGATCTATTTTGGTACTGGGATCCATATTACTATA
GGAGAAGACAACTAAGAACAGATGGTGGTGACAAAATGAACTTCATCGAATCTGTATTCTCATTCGTATTTGGTGATGGTGATCCAAATCAAGGAATTGA
AGAAGAGAGGTGGAAGTTGATTGGACAATATATTTCCTCTAATGGTGGTGTTGTTGCTGCTGAAGAACTAGCACCGTTTCTTGATTTGAAAACTACCGAG
GATATGAGTGATGAATCATACATCTTACCAGTTCTTCTACGGTTTGATGGAAAGCCAGAAATTGATGAAGAGGGAAATATTCTGTATCAATTCCCTTCAC
TTCAGCGTACAGCTTCTTCTAAAAGGAGTGGGAGGAAGGAATATGTGGGTAAACGATGGGCAGATTGGGTTGGAGGGGTTGGGAAGTTTTTCAGAGAGAA
AACATGGCAATTCAGTAAGACAAGTTCATCAGAGAGAGCAATGGCCATTGGGTTGGGCGGGCTTAATCTATTTGGAGTGATCATTCTTGGAACAATGTTA
CAGGACATGGCCATTACACAAAATGGAGGATTCATTAAATTTGTTTCTAGCATATTTCCTCTACTTCAGATATATGCTGGTTCTTTCTTTGCAATTCCAT
TGATCCGCTGGTTCCTCGTTCTCCAAAGGAATGCTGAAATAGAAAATAGAAACAGAGCAAGGGAGCAATGTGCTCAAATGCTTGAGTTACCTGATATTTC
ACTGAGGCGGAAGATTCTAAGTGCTCGGGATATGGCCCAAAAAACAGTCATAGGGCAGGATCGCATTGTCTATACCACTGACAAGGACATAATTGAGCAA
GATGTTGAGGCCCGAGAATGGGATCAGAGATTCCGAGAGATCGAGAAGTCAGATTGA
AA sequence
>Potri.004G090400.1 pacid=42795416 polypeptide=Potri.004G090400.1.p locus=Potri.004G090400 ID=Potri.004G090400.1.v4.1 annot-version=v4.1
MASISTPLSYSPSPVRLKPPVRLKPPDSLLLRTQTLHKLSFKSPNPKTPIGFSVKATADVTKTMGIRPGSVVETDKLPSDVRNRAMEAVDACGGRVTIGD
VASRAGLKLNEAQKALQALASDTDGFLEVSDEGDVLYVFPKDYRSKLAAKSLRLKFEPLFEKGKAAAEYLIRVSFGTALIASIVIVYTTIIAILSSSRDE
NDRGRRRSRSFDTGFAFYLSPTDLFWYWDPYYYRRRQLRTDGGDKMNFIESVFSFVFGDGDPNQGIEEERWKLIGQYISSNGGVVAAEELAPFLDLKTTE
DMSDESYILPVLLRFDGKPEIDEEGNILYQFPSLQRTASSKRSGRKEYVGKRWADWVGGVGKFFREKTWQFSKTSSSERAMAIGLGGLNLFGVIILGTML
QDMAITQNGGFIKFVSSIFPLLQIYAGSFFAIPLIRWFLVLQRNAEIENRNRAREQCAQMLELPDISLRRKILSARDMAQKTVIGQDRIVYTTDKDIIEQ
DVEAREWDQRFREIEKSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G03900 Iron-sulphur cluster biosynthe... Potri.004G090400
[exp]
0 1
AT1G74850 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid... Potri.015G069100
[exp]
1.00 0.9825
AT5G08650 Small GTP-binding protein (.1) Potri.001G305300
[exp]
1.41 0.9799
AT3G05350 Metallopeptidase M24 family pr... Potri.013G021400
[exp]
2.44 0.9781
AT1G17220 FUG1 fu-gaeri1, Translation initiat... Potri.011G140100
[exp]
4.00 0.9747
AT5G49030 OVA2 ovule abortion 2, tRNA synthet... Potri.010G014500
[exp]
4.24 0.9685
AT2G02070 C2H2ZnF ATIDD5 indeterminate(ID)-domain 5 (.1... Potri.010G099200
[exp]
4.69 0.9673
AT5G18570 EMB3138, ATOBGL... EMBRYO DEFECTIVE 3138, EMBRYO ... Potri.010G022400
[exp]
5.47 0.9721
AT5G57960 GTP-binding protein, HflX (.1) Potri.002G031100
[exp]
8.36 0.9710
AT3G07670 Rubisco methyltransferase fami... Potri.014G169300
[exp]
9.21 0.9724
AT3G53920 SIG3, SIGC SIGMA FACTOR 3, RNApolymerase ... Potri.006G234400
[exp]
10.09 0.9640

Potri.004G090400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.