Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36810 419 / 1e-146 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 414 / 4e-145 Terpenoid synthases superfamily protein (.1) AT2G23800 383 / 2e-132 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT2G18640 375 / 4e-129 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G20160 351 / 3e-120 Terpenoid synthases superfamily protein (.1) AT3G14550 347 / 3e-118 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT3G14530 343 / 4e-117 Terpenoid synthases superfamily protein (.1) AT3G14510 339 / 2e-116 Polyprenyl synthetase family protein (.1) AT3G29430 340 / 1e-115 Terpenoid synthases superfamily protein (.1) AT3G32040 328 / 3e-111 Terpenoid synthases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G124600 [exp] 613 / 0 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 528 / 0 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 443 / 3e-156 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 436 / 4e-153 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.009G139600 [exp] 256 / 3e-83 AT4G38460 389 / 7e-136 geranylgeranyl reductase (.1) Potri.004G179628 [exp] 253 / 1e-81 AT4G38460 403 / 3e-141 geranylgeranyl reductase (.1) Potri.001G380500 [exp] 131 / 2e-34 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.015G043400 [exp] 107 / 1e-26 AT4G38460 121 / 4e-32 geranylgeranyl reductase (.1) Potri.011G099500 [exp] 100 / 2e-23 AT1G78510 415 / 8e-144 solanesyl diphosphate synthase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028509 [exp] 496 / 1e-176 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 461 / 5e-163 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 462 / 2e-162 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 457 / 1e-161 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 431 / 6e-151 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10022499 [exp] 414 / 1e-144 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028507 [exp] 407 / 5e-142 AT4G36810 375 / 2e-129 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009138 [exp] 404 / 1e-140 AT4G36810 373 / 2e-128 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 357 / 3e-124 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10025096 [exp] 246 / 2e-79 AT4G38460 381 / 5e-133 geranylgeranyl reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [poplar] [flax] Terp_synthase PF00348 [poplar] [flax] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Potri.004G090600.1 pacid=42796144 polypeptide=Potri.004G090600.1.p locus=Potri.004G090600 ID=Potri.004G090600.1.v4.1 annot-version=v4.1 ATGGCCTTCTCTTCAACAATCTCTTTCTATGACAATTCGCTTCTCCTCAAAAAACCCATCAATGGCCTTATAAACAACCAGCCAAGAACCCCATTAGGCC ACCTCAAATTTGTGCCCTTGAAAATTCAAGCCACCTATGTTGCAAGCCCATCTTTCAAACAGTCATTTCAATCCCAAGAAGTGGGCAACAAGTCACAGAA GGTCCCTTTGCCAGCATTCGAATTTAAGGAGTACATGATCAACAAGGCAAATCAAGTGAACAAAGCACTAGATGAGGCAGTACCCTTGCAACATCCCCAG AAAATCAATGAAGCCATGAGATATTCTCTGCTCGCGGGTGGAAAGCGTGTACGTCCAATTTTATGCATTGCTTCGTGTGAATTAGTGGGAGGAGATGAGG GGTTAGCAATGCCAGCGGCTTGTGCACTGGAGATGATCCACACCATGTCATTAATCCATGATGATCTTCCCTGTATGGACAACGATGATCTCCGACGAGG TAAGCCCACAAGTCATAAAATATTCGGCGAAGATACTGCAGTTCTTGCTGGCGATGCACTCCTATCACTTGCCTTTGAGCACGTAGCTAGGAACACCAAG AATGTTTCATCGGACCGTGTGGTCCAAGCCATTGCTGAGCTTGGATCAACAGTTGGATCAAAAGGTCTTGTGGCAGGTCAGATTGTGGACATTGACAGTG AAGGTAAAGAAGTGAGTTTGAGCACATTGGAGTATATTCATGTCCATAAAACAGCAAAGCTCTTAGAGGCAGCGGTTGTTTGTGGGGCGATAATGGGAGG TGCAGATGCTACAAGTGTCGAAAGACTTAGGAAATATGCTAGGTCTATCGGGTTGCTGTTTCAGGTGGTGGATGATATACTGGATGTGACCAAGTCCTCA GAGGAACTGGGGAAGACAGCCGGAAAGGATCTGGCGAGTGACAAGGCGACCTACCCCAAGCTGATGGGCATAGACGAGGCCAAGAAATTTGCTGCCCAAT TGGTCGATGAAGCCAATCAAGGTCTTGCTTTCTTCGATCATGTCAAGGCTGCCCCATTATACCATTTTGCTAACTATATTGCTACTCGACAAAATTAA
AA sequence Show only first row Show all	>Potri.004G090600.1 pacid=42796144 polypeptide=Potri.004G090600.1.p locus=Potri.004G090600 ID=Potri.004G090600.1.v4.1 annot-version=v4.1 MAFSSTISFYDNSLLLKKPINGLINNQPRTPLGHLKFVPLKIQATYVASPSFKQSFQSQEVGNKSQKVPLPAFEFKEYMINKANQVNKALDEAVPLQHPQ KINEAMRYSLLAGGKRVRPILCIASCELVGGDEGLAMPAACALEMIHTMSLIHDDLPCMDNDDLRRGKPTSHKIFGEDTAVLAGDALLSLAFEHVARNTK NVSSDRVVQAIAELGSTVGSKGLVAGQIVDIDSEGKEVSLSTLEYIHVHKTAKLLEAAVVCGAIMGGADATSVERLRKYARSIGLLFQVVDDILDVTKSS EELGKTAGKDLASDKATYPKLMGIDEAKKFAAQLVDEANQGLAFFDHVKAAPLYHFANYIATRQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.004G090600 [exp]	0	1
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Potri.001G018400 [exp]	1.00	0.9858	RAP21
AT2G45220			Plant invertase/pectin methyle...		Potri.002G145500 [exp]	1.41	0.9807	Pt-PE9.2
AT5G66420			unknown protein		Potri.005G120100 [exp]	3.00	0.9782
AT1G07160			Protein phosphatase 2C family ...		Potri.019G071600 [exp]	3.46	0.9778
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Potri.006G121900 [exp]	3.74	0.9725
AT2G45220			Plant invertase/pectin methyle...		Potri.015G127700 [exp]	4.24	0.9747	Pt-PME.5
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139400 [exp]	4.47	0.9758
					Potri.019G016110 [exp]	6.32	0.9699
AT5G06060			NAD(P)-binding Rossmann-fold s...		Potri.006G089700 [exp]	6.32	0.9659
					Potri.018G118900 [exp]	7.41	0.9658

Compare expression of checked genes

Potri.004G090600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.