Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66345 499 / 1e-172 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 188 / 1e-51 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02150 175 / 8e-47 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 170 / 1e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 168 / 2e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 167 / 2e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 166 / 2e-44 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G59900 166 / 2e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09820 163 / 2e-43 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12300 161 / 1e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276500 [exp] 180 / 9e-49 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 179 / 1e-47 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 175 / 6e-47 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G071600 [exp] 167 / 1e-44 AT5G40400 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 167 / 6e-44 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046200 [exp] 163 / 2e-43 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G368700 [exp] 166 / 3e-43 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098400 [exp] 164 / 4e-43 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G038300 [exp] 161 / 1e-42 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004045 [exp] 514 / 9e-179 AT1G66345 442 / 6e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002294 [exp] 499 / 6e-173 AT1G66345 447 / 2e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 187 / 1e-50 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016727 [exp] 170 / 4e-46 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 169 / 6e-45 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 169 / 6e-45 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 168 / 5e-44 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 167 / 7e-44 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008185 [exp] 167 / 1e-43 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 163 / 3e-43 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G090800.2 pacid=42794912 polypeptide=Potri.004G090800.2.p locus=Potri.004G090800 ID=Potri.004G090800.2.v4.1 annot-version=v4.1 ATGGCTTTGCTGCGTCGAACTTTTCCATCTTTGATTTCAACACCACTCAAGTATTCCATTCATCCACGTGTCTGCAGTTCTTGGTTTGAGGTGGCTAGAT TTCTTCATGATGGCACAAAAACAGAAAGTGATACAGTTGTAAGCTCCATATGTGATTCATTAAGGAGAGGATATAACTGGGATACCCTGAATAGAAAATT TGAGTCTCTTCAGCTCAACAATTTGCTTGTCAAAAATGTACTGCTGGAATTGAAGGAACCAACCGATGCAAAACGGGCTCTAGGCTTCTTTCATTGGTCA GCAAGAAGGAATTTTGTACATGGGGTTCAATCATATTGTCTGATGATTCACATATTAATTCAAGCTCGGCTGATTATGGATGCTCAGGCATTGCTTGAAT CACTTCTGAAGAAAAGTGTAGGGGATCCTACAAAATTTTTGGTTGTGGATTCCCTCCTTAGTAGTTATAAGATTATTATATCAAGTCCCTTAGTTTTTGA TTTGCTGGTTCAGGCTTATGCGAAGCAGAGAATGTTTGAGATTGGTTTTGATGTATGCTGCCGCTTAGAAGAACATAGGTTCACCTTAAGCCTTATAAGT TTCAACACCTTGATTCATGTTGTTCAAAAATCTGATAAAAGTCCCCTGGCGTGGAAGATTTATGAGCATATGCTTCACCGAAGAACTTACCCAAATGAAG CAACAATCGAAAGCATGATCAGTGCTTTGTGTAAGGAAGGGAAGTTGCAAACAATTGTGAACATGTTGGATAAGATCCATGGAAAGAGATGCTCTCCTGT AGTTATTGTTAATACTTGTTTGGTATTTAGGATTTTAGAGGAGGGAAGAGTTGAACCGGGCTTGGCTTTATTGAAAATGATGCTTCGGAAGAACATGATT CTGGATACTGTTGCTTACTCTTTGATTGTTTATGCTAAAGTCAAACTTGGAAATTTGAACTCAGCAATGCAGGTCTATGAAGAAATGCTTAAGCGAGGTT TCAATGCAAATTCTTTTGTGTACACTTCATTTATAGGAGCTTATTGTAAGGAGGAAAGAATTGAAGAAGCAAATCAGTTGTTGCAAGAAATGGAAAACAT GGGTTTGAAACCATATGGAGACACTTTTAACTTTCTCCTTGAAGGTTGTGCTAAAGCAGGAAGAGTAGAAGAAACTTTGAGTTACTGCAAGAAAATGATG GAGATGGGACATGTTCCCAGCCTTTCAGCTTTCAATGAGATGGTAGGAAAGCTGTGTAGAATAGAGGATGTGACACGAGCAAATGAGATGTTGACGAATT TGTTAGATGAAGGGTTCTTAGCAGACGAGATCACATACTCTAATCTAATTTCTGGTTATGCAAAAAACAATCAGATTCAGGAAATGCTCAAACTTTACTA TGAAATGGAATATCGCTCACTCTCTCCTGGATTAATGGGTTTCACTTCCTTGATCAAGGGCCTCTGCAATTGCGGAAAACTAGAGGAAGCAGAAAAATAT TTAAGAATTATGATAGGTCGATCTCTAAATCCTCGTGAGGATGTTTATGAAGCATTGATTAAAGTGTATTTTGAAAAGGGTGACAAAAGAAGGGCTCTTA ACCTCTACAACGAAATGGTTTCTAAAGGATTGAAGCTTTGTTGCTCGCATTATTTAGGTGCCAGTACATAG
AA sequence Show only first row Show all	>Potri.004G090800.2 pacid=42794912 polypeptide=Potri.004G090800.2.p locus=Potri.004G090800 ID=Potri.004G090800.2.v4.1 annot-version=v4.1 MALLRRTFPSLISTPLKYSIHPRVCSSWFEVARFLHDGTKTESDTVVSSICDSLRRGYNWDTLNRKFESLQLNNLLVKNVLLELKEPTDAKRALGFFHWS ARRNFVHGVQSYCLMIHILIQARLIMDAQALLESLLKKSVGDPTKFLVVDSLLSSYKIIISSPLVFDLLVQAYAKQRMFEIGFDVCCRLEEHRFTLSLIS FNTLIHVVQKSDKSPLAWKIYEHMLHRRTYPNEATIESMISALCKEGKLQTIVNMLDKIHGKRCSPVVIVNTCLVFRILEEGRVEPGLALLKMMLRKNMI LDTVAYSLIVYAKVKLGNLNSAMQVYEEMLKRGFNANSFVYTSFIGAYCKEERIEEANQLLQEMENMGLKPYGDTFNFLLEGCAKAGRVEETLSYCKKMM EMGHVPSLSAFNEMVGKLCRIEDVTRANEMLTNLLDEGFLADEITYSNLISGYAKNNQIQEMLKLYYEMEYRSLSPGLMGFTSLIKGLCNCGKLEEAEKY LRIMIGRSLNPREDVYEALIKVYFEKGDKRRALNLYNEMVSKGLKLCCSHYLGAST

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66345			Pentatricopeptide repeat (PPR)...		Potri.004G090800 [exp]	0	1
AT3G60680			Plant protein of unknown funct...		Potri.002G145000 [exp]	1.41	0.7200
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G140800 [exp]	2.00	0.6855
AT2G03380			Pentatricopeptide repeat (PPR)...		Potri.010G161800 [exp]	3.16	0.6403
AT5G18120		ATAPRL7	APR-like 7 (.1)		Potri.019G035700 [exp]	36.24	0.5775
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Potri.005G074900 [exp]	37.54	0.6361	Pt-UBP3.2
AT4G35530			phosphatidylinositolglycan-rel...		Potri.018G026700 [exp]	77.38	0.5324
AT3G54970			D-aminoacid aminotransferase-l...		Potri.010G216500 [exp]	78.49	0.5471
AT2G33700			Protein phosphatase 2C family ...		Potri.005G253700 [exp]	105.93	0.5286
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.009G107550 [exp]	125.33	0.5453
AT5G54585			unknown protein		Potri.001G409600 [exp]	143.35	0.5030

Compare expression of checked genes

Potri.004G090800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.