Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28040 61 / 6e-10 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT3G04930 60 / 8e-10 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1.2) AT1G61730 57 / 4e-09 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00390 54 / 6e-08 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G11510 53 / 1e-07 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT2G01370 52 / 1e-07 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G01260 43 / 0.0002 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G056400 [exp] 66 / 7e-12 AT5G28040 229 / 3e-71 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G261700 [exp] 66 / 8e-12 AT5G28040 239 / 9e-75 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G293900 [exp] 57 / 9e-09 AT4G25210 142 / 9e-39 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G088400 [exp] 55 / 4e-08 AT4G25210 133 / 2e-35 DNA-binding storekeeper protein-related transcriptional regulator (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015944 [exp] 70 / 7e-13 AT5G28040 264 / 2e-84 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10019007 [exp] 69 / 1e-12 AT5G28040 256 / 1e-81 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10018859 [exp] 67 / 1e-12 AT4G00390 115 / 9e-30 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10028550 [exp] 62 / 2e-10 AT4G00390 122 / 1e-31 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000940 [exp] 62 / 2e-10 AT5G28040 272 / 2e-87 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10005506 [exp] 61 / 5e-10 AT4G00390 108 / 9e-27 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10002794 [exp] 60 / 6e-10 AT4G01260 96 / 4e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10004772 [exp] 57 / 9e-09 AT4G01260 95 / 1e-21 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10017793 [exp] 44 / 0.0001 AT1G66420 72 / 6e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF04504 [poplar] [flax] DUF573 Protein of unknown function, DUF573
Representative CDS sequence Show only first row Show all	>Potri.004G090900.1 pacid=42796624 polypeptide=Potri.004G090900.1.p locus=Potri.004G090900 ID=Potri.004G090900.1.v4.1 annot-version=v4.1 ATGGACTCCACCCCAGTCCCACAACATATCCCCTTTAAACCCTCTTCCTCTTCTTCAGCCTCCAAACTCCCCATCAAACGCAAAACACCTGATTCTCTCC ACCACCACCACCTCCTCTCTCCAAAACTTGAAACTTCCTCCACCACCACACCTACCACCACAAACCCAGATGCAATCTCCACTCCCACCACTAATTCTGA ATCAAAGCCACCACCTTTTAAGTTCCACAGAATCTGGTCTGAGCCTGATGAAATAAGCTTCCTTCAAGGCCTACTCTCTTCATCCTCTCAAGGCCTCTCA TTTCCTAAAGACTTGCCCTTTTTTTATGACAGATTCTCCAATTCAATGTCACAACCTTACACAAAATCTCAGCTTTCTGAGAAAATGAGAAGGCTGCGTA AGAAGTTTCGCAGTACGTCTTCGCGCCTTGCGCGTAATGGGTTCAATTATTCATTATTATCGCCTCATGATCGTTCTCTTTTTGATCTCTCTAAACAGCT TTGGAGCCCTGAATTTGCTTCAAGCTCGCCTTTTGGAGGTAATAAGAGTACAGGTAGTAATAGTAATAGTAATTTTGATGGTAATGTGAGTAGTTTTCGT CCTGATAATGTTAAAAGGACGAAACTGGATGAGGATTTGGTGGGTGTTAAAGGTAGTTTTTTGCCGGTTTTTGCTTTGCCTTGCGAAAATGTAAATGTGA GTAATGAATTGAATGATCTGGAGTCGTTGGATTTGGATGAATTTGATGATGGGTATGTTGTGAAAATGAGGGAAGGCAATGTGGGTTGGGAGGTGGATAA GGGGGTGAGTGGATGTGGAGGTGGCTGCGGTAGTGTGGCAGTAAAGAGTGTGGCTAAGAGTGTTCTAAATGTGTTTGACGAGTGCGTAAAGGAGGTCAAG AAGGTTGTTCTTAAAGAGAGGTTGGATAGTTCAATGGAAGGGAAGAAGGAGAAGGATTTTCAAAGGAGGTGGAGGGAGCAAAGAGTTGCTGAGTTTGATG TTTTGGCTCTTCGGTTGAGGTTGCTTCTTGACAATTCTGCTAAATAG
AA sequence Show only first row Show all	>Potri.004G090900.1 pacid=42796624 polypeptide=Potri.004G090900.1.p locus=Potri.004G090900 ID=Potri.004G090900.1.v4.1 annot-version=v4.1 MDSTPVPQHIPFKPSSSSSASKLPIKRKTPDSLHHHHLLSPKLETSSTTTPTTTNPDAISTPTTNSESKPPPFKFHRIWSEPDEISFLQGLLSSSSQGLS FPKDLPFFYDRFSNSMSQPYTKSQLSEKMRRLRKKFRSTSSRLARNGFNYSLLSPHDRSLFDLSKQLWSPEFASSSPFGGNKSTGSNSNSNFDGNVSSFR PDNVKRTKLDEDLVGVKGSFLPVFALPCENVNVSNELNDLESLDLDEFDDGYVVKMREGNVGWEVDKGVSGCGGGCGSVAVKSVAKSVLNVFDECVKEVK KVVLKERLDSSMEGKKEKDFQRRWREQRVAEFDVLALRLRLLLDNSAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28040	GeBP		DNA-binding storekeeper protei...		Potri.004G090900 [exp]	0	1
AT1G71530			Protein kinase superfamily pro...		Potri.013G100100 [exp]	2.00	0.8196
AT3G49710			Pentatricopeptide repeat (PPR)...		Potri.014G012500 [exp]	3.31	0.7711
AT1G18010			Major facilitator superfamily ...		Potri.012G011000 [exp]	10.95	0.8034
AT4G38040			Exostosin family protein (.1)		Potri.007G058400 [exp]	15.09	0.8068
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.008G033200 [exp]	15.36	0.8166
AT4G24560		UBP16	ubiquitin-specific protease 16...		Potri.005G156900 [exp]	20.00	0.7312
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012500 [exp]	30.57	0.7932
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Potri.003G124300 [exp]	40.06	0.7645
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.007G119800 [exp]	46.98	0.7554
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.007G100000 [exp]	48.77	0.7259

Compare expression of checked genes

Potri.004G090900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.