Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37830 2153 / 0 OXP1 oxoprolinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G124400 [exp] 505 / 2e-169 AT5G37830 414 / 2e-135 oxoprolinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025331 [exp] 2194 / 0 AT5G37830 2219 / 0.0 oxoprolinase 1 (.1) Lus10024411 [exp] 2188 / 0 AT5G37830 2214 / 0.0 oxoprolinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF01968 [poplar] [flax] Hydantoinase_A Hydantoinase/oxoprolinase CL0108 [poplar] [flax] PF02538 [poplar] [flax] Hydantoinase_B Hydantoinase B/oxoprolinase CL0108 [poplar] [flax] Actin_ATPase PF05378 [poplar] [flax] Hydant_A_N Hydantoinase/oxoprolinase N-terminal region
Representative CDS sequence Show only first row Show all	>Potri.004G091000.1 pacid=42796737 polypeptide=Potri.004G091000.1.p locus=Potri.004G091000 ID=Potri.004G091000.1.v4.1 annot-version=v4.1 ATGGGAAGTTCGAAGAAAAAAGAAGAAGAAAAGCTTAGATTTTGTATAGATAGAGGCGGAACGTTTACCGATGTGTATGCGGAAATTTCAGGCAAGAGTG ATGGTCGGGATTTGAAACTGTTATCTGTTGATCCGGCGAATTATGAGGATGCTCCGGTGGAAGGGATTAGGAGGATTCTTGAGGAGTATACAGGAGAGAA GATTCCCAGAACCTCCAAAATCCCCACGAATAAGATTGAGTTTATTAGGATGGGGACCACTGTAGCTACCAATGCCTTGTTGGAGAGAAAAGGGGAGAGG ATTGCTTTGTGTGTCACTCGAGGGTTTAAGGATTTGTTGCAGATTGGTAATCAGGCTCGTCCGAATATCTTTGATCTTACGGTTTCGAAACCCTCCAACC TTTACGAGGAGGTTATTGAGGTTGATGAGAGAGTTCAGCTTGTTGTTGATGATAGTGGGGATGATGGTTTGGGTTCGGTGGTTAAAGGGGTGTCGGGTGA GCTTGTGAGGGTTGTGAAGCCGGTTGATGAACAAGGTTTGAAGCCTTTGTTGAAGGGGTTGTTGGAGAGAGGGATTAGTTGTTTGGCTGTTGTGTTGATG CATTCTTATACGTTTCCGCAACATGAATTGGCTGTGGAAAAGCTTGCTGTTGATTTGGGTTTTCGACATGTTTCTTTGTCTTCGTCTTTGACTCCCATGG TTCGAGCTGTTCCTCGGGGGTTAACTGCTAGCGTGGATGCGTACTTAACCCCAGTTATCAAGGATTATTTGTCAGGTTTTATGTCGAAATTTGATGAAGG GTTGGGTAAGGTGAATGTTTTGTTTATGCAATCGGATGGAGGGCTTGCACCGGAAAATAGGTTTTCAGGACACAAAGCTGTTTTGTCTGGTCCTGCAGGT GGAGTTGTTGGTTATTCGCAGACACTTTTTGGGCTTGAAACAGAGAAGCCCCTTATTGGGTTTGATATGGGTGGTACATCTACGGATGTGAGCCGTTATG CTGGGAGTTATGAACATGTCCTTGAAACCCAGATTTCCGGTGCCATTATTCAAGCACCTCAACTTGACATAAGCACTGTTGCTGCTGGTGGTGGATCAAA GTTGAAGTTCCAGTTTGGAGCTTTCCGGGTAGGACCAGAATCAGTGGGTGCTCATCCAGGCCCAGTTTGTTATCGTAAAGGTGGGGAATTGGCAGTTACC GATGCCAATCTCGTTCTAGGATTTGTCATTCCTGATCATTTTCCATCCATTTTTGGCCCCAACGAAGATCAGCCTTTAGATATCAAGGCAACAAGAGAAG AATTTGAGAAGCTTGCCAATCAAATAAACTCCTATAGGAAGAGCCAAGATTCATCTGCTAAGGACATGACTGTGGAAGAGATTGCTCTGGGATTTGTGAA TGTTGCAAATGAAACAATGTGCCGTCCGATACGGCAGTTGACAGAGATGAAGGGCCATGAAACAAGGAACCATGCTCTTGCTTGCTTTGGAGGTGCTGGC CCACAGCATGCTTGTGCCATTGCCAGGTCGTTGGGCATGAAAGAAGTACTTGTTCACAGATTCTGTGGGATCTTAAGTGCGTATGGCATGGGCTTGGCAG ATGTTGTTGAAGAGGCACAAGAGCCATATTCTGCTGTTTATGGCCCTGATTCCATCTTGGAGGCTTCCCATAGAGAAGATATGTTACTGAAGCAGATAAG GCAGAAGCTACAGGAGCAAGGGTTCAGAGAGGAGAACATTACAACAGAAACATATTTAAACTTGCGGTATGAGGGCACGGATACTGCCATCATGGTAAAG AAACATGTCAATGAAGATGGGTCAGGGTCCGACTATGCAGTGGAGTTTGTGAAGCTATTCCAGCAGGAGTACGGATTCAAGCTACAGAATAGGAATATTC TTATATGTGACGTCAGAGTTCGTGGTATTGGAGTCACTAACATACTGAAGCCACAAGTACTGGAACCCACTTCTGGTAACCTGGAAGTGGAAGGCCACTA TAAGGTTTACTTTGGGAATGGGTGGCTTGATACACCTCTATACAAGCTTGATAATCTGGGTTGTGGACACGTCATACCTGGCCCTGCAATCATCATGAAT GGAAATAGCACGGTGGTAGTGGAACCCCAATGCAAAGCTATCATAACGATATATGGAAACATCAAAATTGAAATTGAGTCTAACATGAGCACCGTGAAAA TAGCCGAAAAAGTTGCAGATGTTGTGCAGCTCTCAATTTTCAATCACAGATTTATGGGAATAGCTGAACAAATGGGACGGACGCTACAGCGAACTTCCAT ATCAACAAATATCAAGGAAAGGCTAGATTTCTCTTGTGCTCTCTTTGGCCCTGATGGGGGACTAGTTGCTAATGCCCCCCATGTCCCTGTGCATCTTGGA GCCATGTCCAGTACTGTTCGGTGGCAGCTCAATTATTGGGGAGAAAACTTGAATGAAGGTGATGTTTTGGTCACCAACCATCCTAGTGCCGGAGGTAGCC ATCTTCCTGACATAACTGTCATCACACCTGTGTTTGATAATGGTAAGCTGGTTTTTTTTGTTGCAAGTAGAGGACATCACGCAGAGATTGGGGGTATTAC TCCTGGAAGCATGCCCCCCTTTTCAAAGTCAATATGGGAAGAAGGAGCTGCAATTAAAGCATTTAAGCTTGTAGAAAAGGGGATTTTTCAGGAAGAGGGA ATTGTTAACCTTCTCCAGTTTCCTGGTTCTGATGAATCAGCTCATAAAATCCCTGGAACTCGCCGGCTTCAAGACAATTTATCAGACCTACATGCACAAG TAGCTGCAAACCAGAGAGGTATCTCCCTTATCAAAGAACTGATTGAGCAGTATGGTTTGGAAACTGTTCAGGCCTATATGACCTATGTACAGCTAAATGC AGAAGAAGCAGTGAGGGAAATGCTCAAATCAGTTGCTGCTAGAGTTTCATCTCAGTCAGACAAGTTTGGAGAGAATAATAATGTAACTATAGAAGAAGAA GATAGCATGGATGATGGCTCTGTCATACATCTGAAACTAACTATTGATTCTAATAAAGGGGAAGCATTTTTCGATTTTAGTGGGACAAGCCCTGAGGTGT ATGGGAATTGGAATGCACCAGAAGCAGTAACAGCTGCCGCAGTTATATACTGCCTTCGCTGTTTGGTGGATGTTGATATTCCTCTCAACCAAGGTTGTTT AGCCCCGGTTGGAATCCATATTCCTAAAGGCTCATTCCTCTCTCCAAGTGACAAGGCTGCAGTTGTTGGAGGTAATGTTCTCACGTCTCAGAGGGTAACA GATGTTGTACTTACTGCCTTTCAGGCCTGTGCTTGTTCTCAGGGTTGCATGAATAATCTCACTTTTGGGGATAATACTTTTGGCTATTATGAAACAATTG GAGGTGGAAGTGGTGCTGGTCCTCACTGGGATGGGACAAGTGGAGTCCAGTGCCATATGACCAATACCCGTATGACTGATCCAGAGATTTTTGAGCAAAG GTATCCTGTTCTTTTGCATAAGTTTGGACTAAGAGAGAACAGTGGAGGATCTGGGCTTCATAAAGGGGGTGATGGGCTTGTAAGAGAGATAGAGTTCAGG CGGCCAGTTGTAGTGAGTATTCTTTCAGAAAGGCGTGTGCATGCACCAAAAGGTCTGAAGGGGGGGAAAGATGGGGCTCGCGGGGCCAATTACCTAATTA CCAAAGATAAACGGAGAGTTTACCTTGGAGGTAAGAACACAGTTGAGGTGCAGGCAGGGGAGATTCTTGAGATTTTAACTCCTGGAGGTGGTGGGTGGGG TTCATGTTGA
AA sequence Show only first row Show all	>Potri.004G091000.1 pacid=42796737 polypeptide=Potri.004G091000.1.p locus=Potri.004G091000 ID=Potri.004G091000.1.v4.1 annot-version=v4.1 MGSSKKKEEEKLRFCIDRGGTFTDVYAEISGKSDGRDLKLLSVDPANYEDAPVEGIRRILEEYTGEKIPRTSKIPTNKIEFIRMGTTVATNALLERKGER IALCVTRGFKDLLQIGNQARPNIFDLTVSKPSNLYEEVIEVDERVQLVVDDSGDDGLGSVVKGVSGELVRVVKPVDEQGLKPLLKGLLERGISCLAVVLM HSYTFPQHELAVEKLAVDLGFRHVSLSSSLTPMVRAVPRGLTASVDAYLTPVIKDYLSGFMSKFDEGLGKVNVLFMQSDGGLAPENRFSGHKAVLSGPAG GVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYAGSYEHVLETQISGAIIQAPQLDISTVAAGGGSKLKFQFGAFRVGPESVGAHPGPVCYRKGGELAVT DANLVLGFVIPDHFPSIFGPNEDQPLDIKATREEFEKLANQINSYRKSQDSSAKDMTVEEIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG PQHACAIARSLGMKEVLVHRFCGILSAYGMGLADVVEEAQEPYSAVYGPDSILEASHREDMLLKQIRQKLQEQGFREENITTETYLNLRYEGTDTAIMVK KHVNEDGSGSDYAVEFVKLFQQEYGFKLQNRNILICDVRVRGIGVTNILKPQVLEPTSGNLEVEGHYKVYFGNGWLDTPLYKLDNLGCGHVIPGPAIIMN GNSTVVVEPQCKAIITIYGNIKIEIESNMSTVKIAEKVADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVHLG AMSSTVRWQLNYWGENLNEGDVLVTNHPSAGGSHLPDITVITPVFDNGKLVFFVASRGHHAEIGGITPGSMPPFSKSIWEEGAAIKAFKLVEKGIFQEEG IVNLLQFPGSDESAHKIPGTRRLQDNLSDLHAQVAANQRGISLIKELIEQYGLETVQAYMTYVQLNAEEAVREMLKSVAARVSSQSDKFGENNNVTIEEE DSMDDGSVIHLKLTIDSNKGEAFFDFSGTSPEVYGNWNAPEAVTAAAVIYCLRCLVDVDIPLNQGCLAPVGIHIPKGSFLSPSDKAAVVGGNVLTSQRVT DVVLTAFQACACSQGCMNNLTFGDNTFGYYETIGGGSGAGPHWDGTSGVQCHMTNTRMTDPEIFEQRYPVLLHKFGLRENSGGSGLHKGGDGLVREIEFR RPVVVSILSERRVHAPKGLKGGKDGARGANYLITKDKRRVYLGGKNTVEVQAGEILEILTPGGGGWGSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37830		OXP1	oxoprolinase 1 (.1)		Potri.004G091000 [exp]	0	1
AT4G15840			BTB/POZ domain-containing prot...		Potri.010G014000 [exp]	2.44	0.8167
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Potri.006G148400 [exp]	8.48	0.8182
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.003G171200 [exp]	9.38	0.8173
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.008G011800 [exp]	14.14	0.8157
AT5G20610			unknown protein		Potri.006G145500 [exp]	14.56	0.8167
AT5G66820			unknown protein		Potri.007G041300 [exp]	15.58	0.8133
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.019G041900 [exp]	20.32	0.8147
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.009G170100 [exp]	33.04	0.8070
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Potri.015G095500 [exp]	33.25	0.8035
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.008G041900 [exp]	35.15	0.8157

Compare expression of checked genes

Potri.004G091000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.