Plant FIBer expression Database

Potri.004G091600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G17460 373 / 6e-130 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009117
[exp]
375 / 1e-130 AT5G17460 395 / 7e-139 unknown protein
PFAM info
Representative CDS sequence
>Potri.004G091600.1 pacid=42795196 polypeptide=Potri.004G091600.1.p locus=Potri.004G091600 ID=Potri.004G091600.1.v4.1 annot-version=v4.1
ATGGCTAAAAGACTCTCTTCCCGCCTTTCTTCCCTTCATTTTTCCTTCAGGAGCCCTAAACCCCATTTTCTACCTCAAACTTCTCTAAGGATGGAAGCTC
TTTCTAACTCTGTCACTTCAAGTTATTATTCAATAAATCACAGTTATAATCATGGGTTTTCTCCAAGTTTCCAAGTTATAAGATCATATGCTCGCAATAG
GGATAGGCATTATGATCTTTTTGGCAGTCAAAAGCCTGGGGAAGAGGGATTCCGGGAAGCGTGGAAAAAAGAGATGGATGAAGATTCTTGTCTATGGACA
GGAAGTGAAGATGAAAGTGATGATGAGAACAGTTCTGATAAAGGTAGAAATCGACTTGAAAAAGATATTCGGAAGGTAAGGCAGCAGGCGAAGGAGCACT
CAGACCTTATCGATGCTGATGACAGTGATGAGTTAAGAAGTGTATGGTCTGGGAGTGATGAGGAGAAGACTTTGTGGACTGGTGATGAATGTGATGATGA
GGATGATATTCCTACAGAAGCACACCCCAATGAGGCCAGCGATAGGTATTTAGATAACTTGTTTGAGTTTGAGGAAAAACCCAAGTATCGGACGATCTCG
GAACTGTTGAATGCAGAAAATGAACCAGAGTTGTCCCCTGGGAAGCAAGCTAGGAAACTTGCAGTTGAGAATGCCTTGAAGAAATTAAAGAAAGGGCCAG
ATGGGCGTTACACCAATGTGTGGGAAGTCATGAGTGATATAGACATCCTAATTGGAGCATTTGAAAATATTGTTTCTGGACCAGAGTATGAGGAGCTTCG
TCAGGGAGGGCCTAAGAAATTGAATATGCAGTTTTTCAAGGATATACAAGCACGTATGAGAGATCCAAATTTCAAGTTCTCACCTGAGTTAAAGTTGAAA
CCAAAGAGCACACTTGTTCCAAGAAAGAAATGGCAGAAGGCACAGTCAAGACGAAGAAAAGCACAGAGGCGTTAA
AA sequence
>Potri.004G091600.1 pacid=42795196 polypeptide=Potri.004G091600.1.p locus=Potri.004G091600 ID=Potri.004G091600.1.v4.1 annot-version=v4.1
MAKRLSSRLSSLHFSFRSPKPHFLPQTSLRMEALSNSVTSSYYSINHSYNHGFSPSFQVIRSYARNRDRHYDLFGSQKPGEEGFREAWKKEMDEDSCLWT
GSEDESDDENSSDKGRNRLEKDIRKVRQQAKEHSDLIDADDSDELRSVWSGSDEEKTLWTGDECDDEDDIPTEAHPNEASDRYLDNLFEFEEKPKYRTIS
ELLNAENEPELSPGKQARKLAVENALKKLKKGPDGRYTNVWEVMSDIDILIGAFENIVSGPEYEELRQGGPKKLNMQFFKDIQARMRDPNFKFSPELKLK
PKSTLVPRKKWQKAQSRRRKAQRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G17460 unknown protein Potri.004G091600
[exp]
0 1
AT3G22670 Pentatricopeptide repeat (PPR)... Potri.010G084000
[exp]
5.09 0.9227
AT4G24500 hydroxyproline-rich glycoprote... Potri.005G153300
[exp]
5.29 0.9179
AT5G59600 Tetratricopeptide repeat (TPR)... Potri.001G243800
[exp]
8.66 0.9056
AT2G37400 Tetratricopeptide repeat (TPR)... Potri.016G080000
[exp]
12.08 0.9191
AT1G08845 Ribosomal L18p/L5e family prot... Potri.013G029300
[exp]
16.43 0.8961
AT4G27390 unknown protein Potri.001G405800
[exp]
17.14 0.9186
AT3G46790 CRR2 CHLORORESPIRATORY REDUCTION 2,... Potri.009G037600
[exp]
17.46 0.9162 CRR2.1
AT1G08070 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSIN... Potri.018G040100
[exp]
18.16 0.9076
AT4G33540 metallo-beta-lactamase family ... Potri.010G169900
[exp]
23.23 0.8828
AT5G50110 S-adenosyl-L-methionine-depend... Potri.012G076100
[exp]
25.33 0.9153

Potri.004G091600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.