Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37930 80 / 5e-16 Protein with RING/U-box and TRAF-like domains (.1) AT5G37890 69 / 9e-13 Protein with RING/U-box and TRAF-like domains (.1) AT5G37900 69 / 1e-12 TRAF-like superfamily protein (.1) AT1G66620 68 / 3e-12 Protein with RING/U-box and TRAF-like domains (.1) AT5G37870 61 / 4e-10 Protein with RING/U-box and TRAF-like domains (.1) AT1G66650 61 / 9e-10 Protein with RING/U-box and TRAF-like domains (.1) AT1G66630 59 / 3e-09 Protein with RING/U-box and TRAF-like domains (.1) AT1G66610 58 / 7e-09 TRAF-like superfamily protein (.1.2) AT1G17930 56 / 5e-08 Aminotransferase-like, plant mobile domain family protein (.1) AT5G62800 53 / 3e-07 Protein with RING/U-box and TRAF-like domains (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G091900 [exp] 138 / 3e-37 AT5G37930 143 / 3e-41 Protein with RING/U-box and TRAF-like domains (.1) Potri.017G148100 [exp] 122 / 8e-30 AT5G37930 206 / 4e-63 Protein with RING/U-box and TRAF-like domains (.1) Potri.004G072800 [exp] 121 / 1e-29 AT5G37930 173 / 9e-51 Protein with RING/U-box and TRAF-like domains (.1) Potri.010G214500 [exp] 117 / 2e-27 ND / Potri.017G122800 [exp] 103 / 2e-23 AT5G37930 180 / 5e-53 Protein with RING/U-box and TRAF-like domains (.1) Potri.005G101400 [exp] 52 / 8e-08 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.008G067400 [exp] 48 / 3e-06 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.002G009000 [exp] 47 / 7e-06 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 47 / 8e-06 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028535 [exp] 134 / 1e-35 AT5G37930 134 / 7e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10009111 [exp] 134 / 1e-35 AT5G37930 134 / 5e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10003602 [exp] 55 / 1e-07 ND / Lus10001737 [exp] 47 / 6e-05 AT2G04865 636 / 0.0 Aminotransferase-like, plant mobile domain family protein (.1) Lus10040192 [exp] 44 / 0.0001 AT3G51880 140 / 1e-42 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10028298 [exp] 44 / 0.0002 AT3G51880 134 / 6e-40 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10012252 [exp] 41 / 0.0005 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 41 / 0.0007 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G091800.4 pacid=42794085 polypeptide=Potri.004G091800.4.p locus=Potri.004G091800 ID=Potri.004G091800.4.v4.1 annot-version=v4.1 ATGTTATGTATAACTGATAGCGAAAGCATGAAGAAAAAACAGGAGGGAAAAAAGGTCCCTAGTGAAGGAAATTTATCAACGGAAAAGAGAAAAGCGGAAG ATGATATAGAGTCAGCAGAGAAGAGGAAAAGGAAGAAGAACAAGTGTCCTACTCCTCGTCCAGCATGCTCATGGGTGCATTTTAGTCGGGAGTTTATCAA GGAGTACAGCGCTTCCCATCCTGAATCATGTGGTCTGAAAGCTGCCACAAAGGCAGCATCAGATGCCTGGAAGTCAATGAGGGTGGAGGAGAAAGCAAAA TATACAAAGCAAGCTCGTGAATTGTGGGATAGTTACTTGAGCACTGCTCCTGCTCGTATCCCCAAGCCAAGGAAACAGACCAAACTAGTTACGAGATGCT CTCCAGGCCGTTTGTTTAATGTGCTTCAACGGCTCTCACCAGAACAAAATGCTGCAGTGAAAAGCATGGGATTTGGCAGTCTTCTTGGCCTTAGATGTCG GACCCTGCGCCGCAGCTTGTGCCTTTGGCTATTGGAGAGGTTCAACACTGCAGGATGCAGCTTGGAGATTTGTGGCATGTGCATTCCTTTATCCCCAAGA GACGTGGAGATTGTGTTGGGATTAGCAGCTAGCGGGAAAGATGTGATCAACTCAGGGCCTGATGACTTAATTGTCGACTTACGTCGCAGCTATAATGCTA CAAATCATGGAATTTCAGTGCGTCTTCTAGAAGAGAGGTTGACAGCTCCAGAAGCTGGAGAGGATTTCAAGAGATCGTTTGTCCTCTATGCATTGGGAAC TCTTTTATCCCCAACAGCAAGACTGGATGTTAGCCCTTCATTTCTCCATTTCCTGACAAATATGGATGTTGTCCATCAATATAATTGGGGAAAATTCTTG CTTGATCGTCTAGTGCGGGAAGTATCTCGCTTTCACCAAGGAAAGCAACGCGCGGTTGGTGGCTGTCTTTTGTTTCTCCAGCTCTTTTACTATGAGAGCA TCTCTGTTGAGGGATCCCATTCGTCAAATTCTTCTGTTGTTCCTTGTTTGTCATCATGGGGTGAGGAAGAGATTTCTGAAAGAGAAAAACGGCAAAGAGA GCTTGGTGGTTATGGCTTTGGAGAGGTAATTTGCAAGGAGAGGTGCACTGGCTTGGAGTTTTCAGAGTCCAGAGGCCAACTAGACGGTTCATCAGAAGGC AAAATAAGCAGTGGGGTTAATCATGATTCTGTTTTTGAGCAGCAAGCTAACCAGGCTGGCAAAGAAATAATGAACGGGAATACTTATGTGGAAGGGGCAA ATGTGCCAAGCCTTTTGACAAGTAATGATGTATTGTGCGGGAACATGGAGGTGGGTACTGAATCAGCTTCAACAATATGCCAAAACAAAGAATATGACTG CAATGGAACACTGAATTGCATAGATGATGTTATCCCTGAAGAAACATGCATCTTTTCACCCCATGCGTGCCCTCTTCTAGACTGTAACTTTACTGGCTCG TCTGAACAGTTGTCACTACACTTCAGCAGTAAACATTGGGACTGTGGAAGGCGTTTTAGGTACAACATTCCTTTATCTGTCTCATTAGGGGTGAACGAGC AATTCCTTGTTCTCCAAGCAGAGGAAGATGGTGTTCTTTTTCTACTCGGCAAGGGCATTGAGAGCTTAGGGAATACAGTCATCGTAACCTGTATTGGACC AAGCTCATCGCAGGACAGGTTCTTATATGATGTCGTGGCAAGTAGAGGGGTAAGCTCTCTCAGATTGAAATCATTAACCGAGTGTTTTCCTGGGAGGGTG GAAGGCTTACCTCCTGTAGATTTTCTTCTGATTCCATTCGCTTTCCTTGGTCCTTCTGGGCAGCTTGACTTGGAGGTTTGTATATGGAGTTCAACCGAGC TAGGTGCAGATTGCACTTAA
AA sequence Show only first row Show all	>Potri.004G091800.4 pacid=42794085 polypeptide=Potri.004G091800.4.p locus=Potri.004G091800 ID=Potri.004G091800.4.v4.1 annot-version=v4.1 MLCITDSESMKKKQEGKKVPSEGNLSTEKRKAEDDIESAEKRKRKKNKCPTPRPACSWVHFSREFIKEYSASHPESCGLKAATKAASDAWKSMRVEEKAK YTKQARELWDSYLSTAPARIPKPRKQTKLVTRCSPGRLFNVLQRLSPEQNAAVKSMGFGSLLGLRCRTLRRSLCLWLLERFNTAGCSLEICGMCIPLSPR DVEIVLGLAASGKDVINSGPDDLIVDLRRSYNATNHGISVRLLEERLTAPEAGEDFKRSFVLYALGTLLSPTARLDVSPSFLHFLTNMDVVHQYNWGKFL LDRLVREVSRFHQGKQRAVGGCLLFLQLFYYESISVEGSHSSNSSVVPCLSSWGEEEISEREKRQRELGGYGFGEVICKERCTGLEFSESRGQLDGSSEG KISSGVNHDSVFEQQANQAGKEIMNGNTYVEGANVPSLLTSNDVLCGNMEVGTESASTICQNKEYDCNGTLNCIDDVIPEETCIFSPHACPLLDCNFTGS SEQLSLHFSSKHWDCGRRFRYNIPLSVSLGVNEQFLVLQAEEDGVLFLLGKGIESLGNTVIVTCIGPSSSQDRFLYDVVASRGVSSLRLKSLTECFPGRV EGLPPVDFLLIPFAFLGPSGQLDLEVCIWSSTELGADCT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37930			Protein with RING/U-box and TR...		Potri.004G091800 [exp]	0	1
AT1G19485			Transducin/WD40 repeat-like su...		Potri.008G200900 [exp]	3.74	0.8262
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Potri.018G149500 [exp]	4.24	0.8020
AT4G37190			unknown protein		Potri.001G361900 [exp]	5.47	0.7847
AT5G65685			UDP-Glycosyltransferase superf...		Potri.007G009600 [exp]	10.81	0.8350
AT3G26850			histone-lysine N-methyltransfe...		Potri.006G227200 [exp]	10.95	0.8390
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Potri.017G065900 [exp]	11.66	0.8045
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.018G146001 [exp]	11.74	0.8351
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Potri.018G125171 [exp]	15.49	0.8072
AT4G32360			Pyridine nucleotide-disulphide...		Potri.017G118801 [exp]	18.02	0.7938
AT1G22660			Polynucleotide adenylyltransfe...		Potri.013G111300 [exp]	20.97	0.7473

Compare expression of checked genes

Potri.004G091800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.