Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66670 440 / 4e-156 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT5G45390 213 / 3e-67 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT1G02560 213 / 5e-67 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT5G23140 175 / 3e-53 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) AT1G11750 157 / 5e-46 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) ATCG00670 146 / 1e-42 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1) AT1G12410 146 / 9e-42 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) AT1G09130 129 / 9e-35 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT4G17040 125 / 2e-33 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) AT1G49970 110 / 2e-27 SVR2, NCLPP5, CLPR1 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119700 [exp] 214 / 1e-67 AT1G02560 493 / 6e-178 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.002G195200 [exp] 214 / 1e-67 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.003G103300 [exp] 213 / 3e-67 AT5G45390 383 / 9e-135 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.007G071700 [exp] 181 / 5e-55 AT5G23140 383 / 1e-135 nuclear-encoded CLP protease P7 (.1) Potri.005G092600 [exp] 177 / 5e-54 AT5G23140 380 / 3e-135 nuclear-encoded CLP protease P7 (.1) Potri.001G130601 [exp] 169 / 2e-51 AT5G45390 239 / 2e-79 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.004G152900 [exp] 166 / 3e-49 AT1G11750 397 / 4e-141 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.009G114001 [exp] 160 / 5e-47 AT1G11750 353 / 2e-123 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.001G115900 [exp] 136 / 1e-37 AT1G12410 408 / 3e-145 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010979 [exp] 328 / 4e-112 AT1G66670 288 / 6e-97 CLP protease proteolytic subunit 3 (.1) Lus10000449 [exp] 327 / 1e-111 AT1G66670 285 / 1e-95 CLP protease proteolytic subunit 3 (.1) Lus10002422 [exp] 201 / 2e-62 AT1G02560 361 / 4e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10001450 [exp] 199 / 8e-61 AT1G02560 365 / 1e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10007589 [exp] 196 / 1e-60 AT5G45390 293 / 2e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10012156 [exp] 192 / 2e-59 AT5G45390 293 / 1e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10010003 [exp] 186 / 8e-57 AT1G02560 308 / 2e-105 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10025022 [exp] 185 / 2e-56 AT1G02560 313 / 3e-107 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10010196 [exp] 180 / 5e-55 AT5G23140 395 / 4e-141 nuclear-encoded CLP protease P7 (.1) Lus10017397 [exp] 178 / 2e-54 AT5G23140 394 / 1e-140 nuclear-encoded CLP protease P7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF00574 [poplar] [flax] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Potri.004G092100.2 pacid=42795638 polypeptide=Potri.004G092100.2.p locus=Potri.004G092100 ID=Potri.004G092100.2.v4.1 annot-version=v4.1 ATGGAGGTAGGTTTAGCATATCTCACAGCCTCACAATCCACAAGCAGCCCTCTATGTTTCTCCAGTCGCAACAGTTTCATTAACAAGAATCATCTTCTGC TACCAGTCACCATTGACACCAGCACTACTATTAGTGTTTGCAGTAAAAGAAGAAAACCTATCTGTGTTAAGGCTTCGAAGAGTTCATTCGATGCTAACAC CGCAAGACAGACTTTGGCTAGCAACTGGGATGTTGAAAAGTTCTCATCTTTTGCTAATTCAGCTCCTACTTTGCCAAAATTTGAGGAATTGGATACTACC AACATGCTTCTCCGTCAAAGAATCATTTTTTTGGGCTCTCAAGTGGATGACGTGACAGCAGATTTTATTATCAGTCAGCTATTATTTCTGGATGCTGAAG ACCCCAAAAAAGACATCAAATTGTTTATTAATTCACCTGGGGGTTCTGTCACTGCTGGACTGGGAATTTATGACGCGATGAAGTTGTGCAAGGCTGATGT TTCAACTATTTGCCTTGGGCTTGCTGCATCCATGGGAGCATTTCTTCTTTCTGCTGGTTCCAAAGGCAAGAGATTTTGCATGCCCAATGGGAGGGTGATG ATTCATCAGCCACTTGGAACTGCTGGAGGCAAAGCATCAGAAATGAGCATCCGGATTAGAGAAATGAGTTACCACAAGATTAAGCTGAACAAGATATTAT CAAGAATAACAGGGAAGCCTCTAGAGCAGGTTGAAGTTGACACTGATCGTGACAATTTCATGAATGCTTGGGAAGCTAAAGAATATGGGTTGGTAGATGA AGTTATTGATGATGGTAAGCCAGGACTAGTTGCACCGCTTACAGATGCTTCACCTCCACCAAAAACTCGGGTGTGGGATCTTTGGAAAATTGAAGGGAGC AAGAAAGCTAAGAATAATTTGCCTTCAGAGCATAAAATGCTACAGAATGGATATGTTGGAGGAGGTGATGGGGATAGAGGCGTGGACCGGGAAAAGGAAA CACCAAGTCCAGTATAA
AA sequence Show only first row Show all	>Potri.004G092100.2 pacid=42795638 polypeptide=Potri.004G092100.2.p locus=Potri.004G092100 ID=Potri.004G092100.2.v4.1 annot-version=v4.1 MEVGLAYLTASQSTSSPLCFSSRNSFINKNHLLLPVTIDTSTTISVCSKRRKPICVKASKSSFDANTARQTLASNWDVEKFSSFANSAPTLPKFEELDTT NMLLRQRIIFLGSQVDDVTADFIISQLLFLDAEDPKKDIKLFINSPGGSVTAGLGIYDAMKLCKADVSTICLGLAASMGAFLLSAGSKGKRFCMPNGRVM IHQPLGTAGGKASEMSIRIREMSYHKIKLNKILSRITGKPLEQVEVDTDRDNFMNAWEAKEYGLVDEVIDDGKPGLVAPLTDASPPPKTRVWDLWKIEGS KKAKNNLPSEHKMLQNGYVGGGDGDRGVDREKETPSPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Potri.004G092100 [exp]	0	1
AT4G31390			Protein kinase superfamily pro...		Potri.006G275600 [exp]	1.00	0.9697
					Potri.002G109400 [exp]	2.44	0.9520
AT3G19900			unknown protein		Potri.010G169700 [exp]	2.44	0.9630
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.016G115500 [exp]	3.87	0.9532	CAX3.2
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Potri.004G064300 [exp]	6.85	0.9282
AT3G10350			P-loop containing nucleoside t...		Potri.010G225100 [exp]	7.34	0.9560
AT5G38520			alpha/beta-Hydrolases superfam...		Potri.019G063900 [exp]	10.77	0.9545
AT3G03890			FMN binding (.1.2)		Potri.019G035200 [exp]	12.00	0.9312
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.004G185900 [exp]	12.84	0.9263
AT3G05345			Chaperone DnaJ-domain superfam...		Potri.013G021000 [exp]	13.60	0.9308

Compare expression of checked genes

Potri.004G092100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.