Plant FIBer expression Database

Potri.004G092400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G18420 543 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G122600
[exp]
754 / 0 AT5G18420 545 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027578
[exp]
575 / 0 AT5G18420 494 / 7e-174 unknown protein
Lus10008554
[exp]
568 / 0 AT5G18420 484 / 2e-170 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10155 CNOT11 CCR4-NOT transcription complex subunit 11
Representative CDS sequence
>Potri.004G092400.1 pacid=42795218 polypeptide=Potri.004G092400.1.p locus=Potri.004G092400 ID=Potri.004G092400.1.v4.1 annot-version=v4.1
ATGACTTTGAGCTTTGAAGAAATGAATTTGTTATATTCACTGCTGAGATCAGAGCAAAGACCAATCGATGAAATCGTCACCGAATTTATCAACAATATCA
ATCGCTCTCGCTCTTCCACTCTTTCTGCTTCTCTCTCACTACTCTTACAGGAGGATAAGATGATGCTCAAGTCTACGGAAAGGTTAACTGCGTTTGCGAT
TCTTTATCTGACGTATTCATTGCAACAGTCTTCTGCAAATCCGTTTGTAGCTTTGTTTATCAATGCTGCTTGTGATGAGGGAGCAGAAAAATACGAGAGG
GCGTTTGTTCTTCAGTTGTTAGCCTCTGGAGGCTCTGGTGGTAGCAAAGAGTTTCTTAAACAGTCTGCTGCAAATTACATCAAAGTTTTTGATCCTTCAG
TCCATGCTTTCCCATCACGTGAACATTTGCAGCATCAATATGGTGATAAAGTCCATCCCGAAGCAGATAATTCCTTATTTAAAAACATTTCACTGAAAAA
TATAGTGCCAGATCCAGATGTACCCCATGGTTGTGATGCAAATTCACAAGAGTTTGATTTGCAACCTGGAGTGAAACCTAAACTTGGATCTGGAGATAGA
GACGAGGCTCTAACTGGATTGTTGGCAAACTTGTCGCCAGAGGGCATAGGTCCTCAATGGATCAGGTCGAGACCACCGAGGCTGCCAATACAGGATGGTG
AATTAGTGTGGCTCAACCCCGATAGCAATCATGAGCTTGTGTGGGATCATTGTATGTGTGCTGATACTAGCAGGGGAGCAGCAGTTAGGGGGTTGATTGC
AAAAGCCTTGAAGGGACCTCTTGCGCCTTCTCAACAAGAGCAAGTCTTGGTGGAATTGACTAATGACCCAAAGCTTGTATATCACTGTGGACTGGCTCCA
AGGAAGTTACCTGAATTGGTAGAGAACAATCCTCTCATTGCGGTTGAAGTTATTACCAAGTTGATAAATTCTCCTGAAATTGCAGATTACTTTACAGTAC
TTGTCAATATGGACATGAGTCTACATTCAATGGAAGTCGTGAACAGGCTTACAACAGCAGTTGAACTTCCAAAGGAGTTCATTCGAATGTACATAACTAA
CTGTATTTCCTTGTGTGAAAATATCAAGGATAAATACATGCAGAACCGACTTGTCAGACTTGTTTGTGTTTTCCTGCAGAGTCTAATCCGAAACAGAATT
ATTGATGTTAAGGATCTTTTCATTGAAGTCCAAGCATTCTGCTTTGAGTTTTCACGAATTAGAGAAGCAGCTGGTTTATTTAGACTTCTCAAGACCTTGG
AATGA
AA sequence
>Potri.004G092400.1 pacid=42795218 polypeptide=Potri.004G092400.1.p locus=Potri.004G092400 ID=Potri.004G092400.1.v4.1 annot-version=v4.1
MTLSFEEMNLLYSLLRSEQRPIDEIVTEFINNINRSRSSTLSASLSLLLQEDKMMLKSTERLTAFAILYLTYSLQQSSANPFVALFINAACDEGAEKYER
AFVLQLLASGGSGGSKEFLKQSAANYIKVFDPSVHAFPSREHLQHQYGDKVHPEADNSLFKNISLKNIVPDPDVPHGCDANSQEFDLQPGVKPKLGSGDR
DEALTGLLANLSPEGIGPQWIRSRPPRLPIQDGELVWLNPDSNHELVWDHCMCADTSRGAAVRGLIAKALKGPLAPSQQEQVLVELTNDPKLVYHCGLAP
RKLPELVENNPLIAVEVITKLINSPEIADYFTVLVNMDMSLHSMEVVNRLTTAVELPKEFIRMYITNCISLCENIKDKYMQNRLVRLVCVFLQSLIRNRI
IDVKDLFIEVQAFCFEFSRIREAAGLFRLLKTLE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G18420 unknown protein Potri.004G092400
[exp]
0 1
AT4G24740 AME1, AFC2 FUS3-complementing gene 2 (.1.... Potri.010G049100
[exp]
4.69 0.8606
AT5G51230 C2H2ZnF AtEMF2, CYR1, V... CYTOKININ RESISTANT 1, EMBRYON... Potri.001G080200
[exp]
13.22 0.8158 VEF901,Pt-VRN2.5
AT2G46560 transducin family protein / WD... Potri.002G173300
[exp]
15.87 0.8048
AT5G51290 Diacylglycerol kinase family p... Potri.004G233300
[exp]
18.54 0.8232
AT1G21170 SEC5B Exocyst complex component SEC5... Potri.005G191500
[exp]
18.97 0.7793 SEC5.1
AT5G19485 transferases;nucleotidyltransf... Potri.009G066400
[exp]
21.07 0.8183
AT3G17310 DRM3, AtDRM3 domains rearranged methyltrans... Potri.010G152200
[exp]
25.39 0.8002
AT4G17640 CKB2 casein kinase II beta chain 2... Potri.003G084900
[exp]
25.59 0.7366
Potri.011G008676
[exp]
26.98 0.7706
AT5G12430 TPR16 tetratricopeptide repeat 16, H... Potri.001G255000
[exp]
30.19 0.7789

Potri.004G092400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.