Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23530 387 / 4e-135 ATCXE18 carboxyesterase 18 (.1) AT5G27320 225 / 2e-71 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 209 / 9e-65 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 204 / 7e-63 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 140 / 8e-39 ATCXE20 carboxyesterase 20 (.1) AT5G06570 139 / 2e-38 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G45600 128 / 3e-34 alpha/beta-Hydrolases superfamily protein (.1) AT2G45610 121 / 1e-31 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 120 / 4e-31 ATCXE17 carboxyesterase 17 (.1) AT1G68620 117 / 4e-30 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014302 [exp] 359 / 4e-124 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1) Potri.001G459400 [exp] 349 / 5e-120 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1) Potri.019G014306 [exp] 246 / 5e-81 AT5G23530 0 / 1 carboxyesterase 18 (.1) Potri.014G135900 [exp] 224 / 5e-71 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.013G028700 [exp] 223 / 4e-70 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G213100 [exp] 216 / 1e-67 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G040600 [exp] 206 / 7e-64 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G073000 [exp] 154 / 5e-44 AT2G45600 352 / 2e-121 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G028300 [exp] 142 / 9e-40 AT1G68620 199 / 1e-61 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039162 [exp] 326 / 7e-111 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10013774 [exp] 306 / 6e-103 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10029541 [exp] 261 / 3e-86 AT5G23530 256 / 2e-84 carboxyesterase 18 (.1) Lus10000928 [exp] 219 / 8e-69 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10002254 [exp] 218 / 3e-68 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10027969 [exp] 208 / 2e-64 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10002907 [exp] 147 / 1e-41 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10036168 [exp] 145 / 2e-40 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10002019 [exp] 143 / 5e-40 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1) Lus10008439 [exp] 142 / 2e-39 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.004G092500.1 pacid=42794851 polypeptide=Potri.004G092500.1.p locus=Potri.004G092500 ID=Potri.004G092500.1.v4.1 annot-version=v4.1 ATGAGCAGTGAAACACCAGAACCGGCAAAACTAGCCATCCCATGGAGGACACGACTGGTCCTTACAATGATCTCAGCGGCAACAGATCTGTCACGTCGTT CAAACGGCACCATAAACAGACGTTTGCTTAATCTCCTTGACTTCAAGTCCTCTCCTTCCCCTAACAAACCCATTCACTCCATCATCTCTTCTGATATCAC CGTGGACCCCACCCGCAACCTCTGGTTCCGCCTCTACACCCCGGAAAATAGCGGGGTTGACGGTAGCGATACTCCCTCTTTGCCTGTTGTGGTATTTTTT CATGGAGGTGGATTTTCTTTCCTAAGTGCCGCATCAAGTTCGTACGACGTCGTTTGTCGCAGGTTTGCACGTATATTTCCTGCTATTGTTCTTTCAGTTA ATTACCGTCTTACGCCTGAACATCGATTTCCCTGTCAATACGATGATGGTTTTGAAGTGCTTCGGTTCCTGGACAATGATCGAGCCAATGGGTTACTGCC ACCTAATGCAGACTTGTCTAAGTGTTTTCTGGTCGGAGATAGTGCCGGGGCAAATTTGGCCCATCATGTTGCGGTTCGGGCTTGTCGGGCTGGGTTTCAG AATGTTAAGGTAATTGGATTGGTTTCTATTCAGCCGTATTTTGGCGGGCAAGAGAGGACCGAGTCGGAACTCCAACTGGTTGGATACCCGTTCGTGACGG TGGAACGAACCGATTGGTGCTGGAGAGTGTTTTTGCCGGATGGATCGGATCGGGATCACTATGCAGTGAATGTGAGTGGACCGAATGCTGAGAACATCTC GGATTTGGATTTTCCGGATACAATTGTGATTGTTGGTGGGTTCGACCCGTTACAAGATTGGCAAAGGAGGTATTATGAGTGGTTAAAGAGATCCGGGAAA GAGGCTACCTTAATTGAGTATTCAAATATGTTTCACGCATTTTATATCTTCCCGGAGCTGCCCGAGTCTTCAAGATTATTCTCGGAGATCAAAGAATTTG TTACCAAGAGACTGTCTAAGCCATAG
AA sequence Show only first row Show all	>Potri.004G092500.1 pacid=42794851 polypeptide=Potri.004G092500.1.p locus=Potri.004G092500 ID=Potri.004G092500.1.v4.1 annot-version=v4.1 MSSETPEPAKLAIPWRTRLVLTMISAATDLSRRSNGTINRRLLNLLDFKSSPSPNKPIHSIISSDITVDPTRNLWFRLYTPENSGVDGSDTPSLPVVVFF HGGGFSFLSAASSSYDVVCRRFARIFPAIVLSVNYRLTPEHRFPCQYDDGFEVLRFLDNDRANGLLPPNADLSKCFLVGDSAGANLAHHVAVRACRAGFQ NVKVIGLVSIQPYFGGQERTESELQLVGYPFVTVERTDWCWRVFLPDGSDRDHYAVNVSGPNAENISDLDFPDTIVIVGGFDPLQDWQRRYYEWLKRSGK EATLIEYSNMFHAFYIFPELPESSRLFSEIKEFVTKRLSKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.004G092500 [exp]	0	1
AT1G63610			unknown protein		Potri.002G011000 [exp]	6.00	0.8347
AT5G65620			Zincin-like metalloproteases f...		Potri.014G010100 [exp]	49.39	0.8393
AT5G04740		ACR12	ACT domain repeats 12, ACT dom...		Potri.010G238300 [exp]	70.48	0.8318
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.006G043092 [exp]	101.92	0.7875
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.017G078000 [exp]	110.12	0.7901
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.006G270300 [exp]	149.33	0.8011
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.015G134600 [exp]	157.46	0.7928	Pt-GA20.2,GA20ox8
AT2G20860		LIP1	lipoic acid synthase 1 (.1)		Potri.005G086200 [exp]	256.41	0.7812	Pt-LIP1.1

Compare expression of checked genes

Potri.004G092500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.