Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27650 411 / 2e-143 PEL1 PELOTA, Eukaryotic release factor 1 (eRF1) family protein (.1) AT3G58390 389 / 2e-134 Eukaryotic release factor 1 (eRF1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204500 [exp] 448 / 6e-158 AT4G27650 635 / 0.0 PELOTA, Eukaryotic release factor 1 (eRF1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009553 [exp] 432 / 2e-151 AT4G27650 635 / 0.0 PELOTA, Eukaryotic release factor 1 (eRF1) family protein (.1) Lus10020376 [exp] 409 / 2e-142 AT4G27650 611 / 0.0 PELOTA, Eukaryotic release factor 1 (eRF1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [poplar] [flax] S11_L18p PF03463 [poplar] [flax] eRF1_1 eRF1 domain 1 CL0267 [poplar] [flax] S11_L18p PF03464 [poplar] [flax] eRF1_2 eRF1 domain 2 CL0101 [poplar] [flax] PELOTA PF03465 [poplar] [flax] eRF1_3 eRF1 domain 3
Representative CDS sequence Show only first row Show all	>Potri.004G092600.1 pacid=42796511 polypeptide=Potri.004G092600.1.p locus=Potri.004G092600 ID=Potri.004G092600.1.v4.1 annot-version=v4.1 ATGAAGATCCGGAGACAGAGTTTTGAACCAGATGGTTCTGGTAGCATTAAAATAGAAGCTGTTGATTTAGATGATTGGTGGGTTCTCTACAATTTGATTG TTCCTGGAGATGCTGTTATGGCTAATACTGTCAGGAAAGTTTCGAAAGACGGTCGTGTTAAAAAAAGTTCGGGGCAGATTAAGCTGAAGCTGGAAATCAA AGTTGAGGCTGTAGATTATGATAAAGAAGAATCAGTCTTGAGAATTCGTGGAAAGAATGAGTTAGAGAATGATTTTGTGAAGATTGGAGCGTTTCATAGT TTAGAACTTGAGCTGAATCAACCCTTTATTCTATTTAAGGAGCACTGGGATGCAGTGGCATTGGATGTGATGAATGAGGCTGCTTTTGATTCTGCTTCAG GATTAGCAAGTATCTTTCTTGTTTGGAGAAGTATTACTACCGCTTGTGCCCGGATAGAAGCTTCAATTCCTCGAGGAAAGAATGGGGTTACGGCATCGAA TAAGTTCTTCGAGCATGTGCTGAAGGCTTTTGTGAAACATGTTGATTTTAATGTGGTTCGGTGTGCTGTGATTGCAAGTCCTGGGGATATTAAAGATCAG TTTTATCGTTACTTATTGTTGGAGGCAGAGAGGAGATTAGAGTTGAAGTTGATTATCAAGAACGAGTCACGGTTTGTTCTTGCGCAAACAAGCTCTGGAA ACAAGCATGCTTTGGAAGATGTTCTTGGTGCTCCGAATGTCATGAACTTGATTAAAGACACTAAAGCAGCTCAAGAGATCCGAGACCTCAAAGATTTCTC TGACATGCTTTTGAATGATTCTGCTCGAGCATGCTATGGGCCGAAGCACGTTGAGTTTGCACAAGAAGAATATATGGCTACACAAACACTTCTCATCAAA GATGATCTTTTCAGGAATAATGCTGATATACCGACGAGGCGAAAGTTTGCCCATCTAGTTAAATCAGTGAAGGATTCAGGGGGCACTGCTCGTATATTTT CATCAATGCACGTTTCAGGAGAGCAGTTGGCAATGTATTCCGGCATCGCTGCAGTTCTTCGATTTCCTCTGCCGGACCTTGAACATATTGAGGTGTAA
AA sequence Show only first row Show all	>Potri.004G092600.1 pacid=42796511 polypeptide=Potri.004G092600.1.p locus=Potri.004G092600 ID=Potri.004G092600.1.v4.1 annot-version=v4.1 MKIRRQSFEPDGSGSIKIEAVDLDDWWVLYNLIVPGDAVMANTVRKVSKDGRVKKSSGQIKLKLEIKVEAVDYDKEESVLRIRGKNELENDFVKIGAFHS LELELNQPFILFKEHWDAVALDVMNEAAFDSASGLASIFLVWRSITTACARIEASIPRGKNGVTASNKFFEHVLKAFVKHVDFNVVRCAVIASPGDIKDQ FYRYLLLEAERRLELKLIIKNESRFVLAQTSSGNKHALEDVLGAPNVMNLIKDTKAAQEIRDLKDFSDMLLNDSARACYGPKHVEFAQEEYMATQTLLIK DDLFRNNADIPTRRKFAHLVKSVKDSGGTARIFSSMHVSGEQLAMYSGIAAVLRFPLPDLEHIEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Potri.004G092600 [exp]	0	1
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Potri.008G134400 [exp]	3.74	0.7956	Pt-UBC.3
AT1G43730			RNA-directed DNA polymerase (r...		Potri.016G103750 [exp]	7.07	0.8080
AT4G01960			unknown protein		Potri.002G192700 [exp]	7.54	0.6390
AT5G20710		BGAL7	beta-galactosidase 7 (.1)		Potri.018G062800 [exp]	7.74	0.8080
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Potri.002G137900 [exp]	10.39	0.6402
AT4G25760		ATGDU2	glutamine dumper 2 (.1)		Potri.004G108560 [exp]	17.54	0.6243
AT5G12000			Protein kinase protein with ad...		Potri.001G198300 [exp]	17.94	0.6190
AT5G59970			Histone superfamily protein (....		Potri.002G143850 [exp]	20.12	0.5955
AT1G57775			Protein of unknown function (D...		Potri.004G110600 [exp]	22.58	0.5760
AT1G57775			Protein of unknown function (D...		Potri.004G110671 [exp]	27.96	0.5146

Compare expression of checked genes

Potri.004G092600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.