Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01300 113 / 1e-32 unknown protein AT1G15010 106 / 3e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G093000 [exp] 244 / 1e-84 AT2G01300 107 / 2e-30 unknown protein Potri.008G127800 [exp] 108 / 7e-31 AT2G01300 150 / 4e-47 unknown protein Potri.010G115100 [exp] 103 / 9e-29 AT2G01300 102 / 3e-28 unknown protein Potri.004G092800 [exp] 81 / 4e-20 AT2G01300 122 / 2e-36 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002277 [exp] 117 / 4e-34 AT2G01300 95 / 3e-25 unknown protein Lus10004062 [exp] 113 / 2e-32 AT2G01300 95 / 4e-25 unknown protein Lus10004069 [exp] 75 / 5e-18 AT2G01300 114 / 2e-33 unknown protein Lus10009104 [exp] 69 / 4e-15 AT2G01300 127 / 5e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G093100.1 pacid=42794392 polypeptide=Potri.004G093100.1.p locus=Potri.004G093100 ID=Potri.004G093100.1.v4.1 annot-version=v4.1 ATGGAAGCAACAAAATTCTCATCCTCCAGGCTTGTCACGAGGCCAGTTTCTCTAGTGAAGCCATGCCCTCGAAGAAACACCATTGTTGCCCTTCATAGAG GAACTAATGGACGAGACCGTGGGGGTAGGCTTGTAGATGAAAGCATGATTGTACTGCGATTACGAATTAAGGAGATGAAGATGTTGGAGGCATGCAACAA CCCACCTTCTCACTGGATGGAGTGGGAGAAACAATATTGCTTGCATTGCAACTACAACAACGATGTTTGTGAAGCAGTGGGGATGTTGCAGAACTATTTG ATGAATGTTAGGCCAAGTCTGGCTCTAGGGATGGTGGCACTTGTTTCATTGAGTGTGACCATCTCTACTGGGGTGGTTTTGTTGCAGGCTATAGAGATAG CTATGGGAGTTCTATCCGCCTTACATTAG
AA sequence Show only first row Show all	>Potri.004G093100.1 pacid=42794392 polypeptide=Potri.004G093100.1.p locus=Potri.004G093100 ID=Potri.004G093100.1.v4.1 annot-version=v4.1 MEATKFSSSRLVTRPVSLVKPCPRRNTIVALHRGTNGRDRGGRLVDESMIVLRLRIKEMKMLEACNNPPSHWMEWEKQYCLHCNYNNDVCEAVGMLQNYL MNVRPSLALGMVALVSLSVTISTGVVLLQAIEIAMGVLSALH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01300			unknown protein		Potri.004G093100 [exp]	0	1
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Potri.013G021900 [exp]	11.18	0.8272
					Potri.001G355650 [exp]	13.85	0.7969
AT1G58070			unknown protein		Potri.003G009400 [exp]	16.79	0.7952
AT2G03350			Protein of unknown function, D...		Potri.010G162400 [exp]	26.17	0.7916
AT1G32310			unknown protein		Potri.001G138700 [exp]	30.85	0.7773
					Potri.010G116200 [exp]	36.66	0.7564
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Potri.016G119650 [exp]	43.49	0.7630
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Potri.004G105500 [exp]	50.61	0.6851
AT1G72480			Lung seven transmembrane recep...		Potri.001G166500 [exp]	56.13	0.7389
					Potri.008G113500 [exp]	56.39	0.7489

Compare expression of checked genes

Potri.004G093100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.