Plant FIBer expression Database

Potri.004G093250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G132501
[exp]
61 / 7e-13 AT1G16970 52 / 2e-08 ARABIDOPSIS THALIANA KU70 HOMOLOG, KU70 homolog (.1)
Potri.011G107400
[exp]
0 / 1 AT1G16970 922 / 0.0 ARABIDOPSIS THALIANA KU70 HOMOLOG, KU70 homolog (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G093250.2 pacid=42796225 polypeptide=Potri.004G093250.2.p locus=Potri.004G093250 ID=Potri.004G093250.2.v4.1 annot-version=v4.1
ATGAAGATGACATGCCAGAAATCAATGACGAAACCCTTCTTGACGAAGAAGCCATGGCTAGGAGCTGTCAAAGCATTTGAAGAGTTCAGGCTTTCTATCT
ATGGAGACAATGATGATGAGGAAAGTGCCATTGGCAATGGAAAAGCAAACGATGCCGCCAAAAAAAAAAAAAACCAGTTGCTGAAAATGCAGCTAAGGAG
TCTGCAAACTACAACTGGCCAGATCTTACTGATAATGGACATGATACTGGTGTTTCACCTCTGCAGGTATAGAGCAGTGAAGGGATTGAAGTTGCTAGGA
ACCAAGTCAGCCTCAATTGTTCCTTGA
AA sequence
>Potri.004G093250.2 pacid=42796225 polypeptide=Potri.004G093250.2.p locus=Potri.004G093250 ID=Potri.004G093250.2.v4.1 annot-version=v4.1
MKMTCQKSMTKPFLTKKPWLGAVKAFEEFRLSIYGDNDDEESAIGNGKANDAAKKKKNQLLKMQLRSLQTTTGQILLIMDMILVFHLCRYRAVKGLKLLG
TKSASIVP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G093250
[exp]
0 1
AT1G54850 HSP20-like chaperones superfam... Potri.013G024900
[exp]
1.73 0.9213
AT4G19490 ATVPS54 ARABIDOPSIS THALIANA VPS54 HOM... Potri.001G442900
[exp]
2.64 0.8958
AT1G21740 Protein of unknown function (D... Potri.002G082000
[exp]
4.24 0.8774
AT5G19485 transferases;nucleotidyltransf... Potri.009G066400
[exp]
6.48 0.8822
AT1G22970 unknown protein Potri.010G117100
[exp]
6.70 0.9077
AT3G11470 4'-phosphopantetheinyl transfe... Potri.016G078400
[exp]
6.92 0.8956
AT4G24520 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTA... Potri.002G106566
[exp]
8.71 0.9022
AT2G26800 Aldolase superfamily protein (... Potri.001G274004
[exp]
8.83 0.8675
AT4G37940 MADS AGL21 AGAMOUS-like 21 (.1) Potri.009G079000
[exp]
9.79 0.8726
AT1G15780 unknown protein Potri.003G028401
[exp]
11.18 0.8693

Potri.004G093250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.