Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01275 239 / 6e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 221 / 1e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G02960 166 / 4e-50 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT1G02610 154 / 3e-46 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 152 / 4e-45 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT3G47550 153 / 5e-45 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 145 / 7e-42 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 120 / 2e-33 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G32670 61 / 3e-10 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G60580 57 / 6e-09 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G122300 [exp] 390 / 5e-139 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 308 / 5e-106 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 308 / 7e-106 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G121900 [exp] 168 / 2e-51 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G169200 [exp] 167 / 1e-50 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.008G086300 [exp] 160 / 8e-48 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.002G196600 [exp] 149 / 2e-44 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G126600 [exp] 142 / 5e-41 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.019G111700 [exp] 139 / 6e-40 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004058 [exp] 363 / 1e-127 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 330 / 3e-114 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10034640 [exp] 253 / 6e-84 AT2G01275 202 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10035271 [exp] 248 / 3e-82 AT2G01275 240 / 2e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10013491 [exp] 224 / 4e-70 AT5G13240 299 / 1e-99 transcription regulators (.1) Lus10021670 [exp] 178 / 2e-54 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10035010 [exp] 170 / 2e-51 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10012826 [exp] 168 / 9e-51 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10034454 [exp] 164 / 4e-49 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10019102 [exp] 161 / 4e-48 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12428 [poplar] [flax] DUF3675 Protein of unknown function (DUF3675) CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.004G093500.2 pacid=42795609 polypeptide=Potri.004G093500.2.p locus=Potri.004G093500 ID=Potri.004G093500.2.v4.1 annot-version=v4.1 ATGGGGGATCATTTTGTGTTCCTGGTGGATCGGTTGCTAACTGAATCCACCCTTGAAGCTGCTATTGAGAGTCAAAACCGATTGCGGCAAACCATGGCTT CAGCAAGTAAAGAAAATACAAAAGAATTTTCACCACATTGGATGGATTTAGAATTGACTTCATTAGCAGGAAAATCAGTAGAGTGTAGGATTTGCCATGA GGAGGAGGATGACATGAACATGGAGATGCCGTGTTCTTGCCGTGGCAGTTTGAAGTATGCTCATCGAAAATGTGTTCAGAGGTGGTGCAATGAGAAGGGT AACACTATCTGTGAGATCTGCCATCAGCAATTTGAGCCTGGTTATACTGCACCACCCCCTTTGTTTTGTTATGGTGCTATTCCAATGAACTTCAGAGGAA ATTGGGAGATACCCAGAAGGGACCTGCACAATCCTCCATCTATAGCTATGGTTACTACTGACCATGAATTTTTGGACTCTGACTTTGATGAGTATTCAGC ACCCTCTCCTAGGAGTGTGATGTGCTGCCGAATAATTGCTATTATATTTATGGTTCTGTTGGTTTTACGTCATACTCTTGCCATCCTAATTAGTGGAGCT GGAGATTACTCAATGACATTGTTTATGTTACTGATATTGAGAACAGTTGGGATTCTTCTGCCTGTTTATGTCATGGTCAGAGCATTTACTGCTATTCAAC ATCGGGGTCGGCAGCAGGATCCTCATTTTCCCCTTGCTGAGTCAGATGAGGAAAATGAGTTGCCGCAACTTCAGACTCATTCGCGCATTATTCATATTCA GTGA
AA sequence Show only first row Show all	>Potri.004G093500.2 pacid=42795609 polypeptide=Potri.004G093500.2.p locus=Potri.004G093500 ID=Potri.004G093500.2.v4.1 annot-version=v4.1 MGDHFVFLVDRLLTESTLEAAIESQNRLRQTMASASKENTKEFSPHWMDLELTSLAGKSVECRICHEEEDDMNMEMPCSCRGSLKYAHRKCVQRWCNEKG NTICEICHQQFEPGYTAPPPLFCYGAIPMNFRGNWEIPRRDLHNPPSIAMVTTDHEFLDSDFDEYSAPSPRSVMCCRIIAIIFMVLLVLRHTLAILISGA GDYSMTLFMLLILRTVGILLPVYVMVRAFTAIQHRGRQQDPHFPLAESDEENELPQLQTHSRIIHIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.004G093500 [exp]	0	1
AT1G17200			Uncharacterised protein family...		Potri.011G140200 [exp]	1.73	0.9659
					Potri.007G088800 [exp]	2.82	0.9588
AT3G51850		CPK13	calcium-dependent protein kina...		Potri.006G101300 [exp]	2.82	0.9435
AT3G57220			Glycosyl transferase family 4 ...		Potri.006G045700 [exp]	3.46	0.9475
AT1G28240			Protein of unknown function (D...		Potri.004G044100 [exp]	3.46	0.9578
AT5G66160		JR700, ATRMR1	ARABIDOPSIS THALIANA RECEPTOR ...		Potri.005G111100 [exp]	4.47	0.9515
AT4G32140			EamA-like transporter family (...		Potri.018G024700 [exp]	5.00	0.9215
AT5G13500			unknown protein		Potri.001G028100 [exp]	6.00	0.9375
AT1G27850			unknown protein		Potri.010G056200 [exp]	7.21	0.9365
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Potri.001G055201 [exp]	7.41	0.9387

Compare expression of checked genes

Potri.004G093500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.