Plant FIBer expression Database

Potri.004G094100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G05320 229 / 6e-72 UBQ10 polyubiquitin 10 (.1.2.3.4.5.6)
AT5G20620 229 / 6e-72 UBQ4 ubiquitin 4 (.1)
AT4G02890 215 / 4e-67 UBQ14 Ubiquitin family protein (.1.2.3.4)
AT5G03240 215 / 4e-67 UBQ3 polyubiquitin 3 (.1.2.3)
AT1G65350 194 / 4e-59 UBQ13 ubiquitin 13 (.1)
AT5G37640 182 / 3e-54 UBQ9 ubiquitin 9 (.1)
AT3G09790 181 / 5e-51 UBQ8 ubiquitin 8 (.1)
AT4G05050 160 / 7e-47 UBQ11 ubiquitin 11 (.1.2.3.4)
AT1G55060 147 / 3e-42 UBQ12 ubiquitin 12 (.1)
AT1G31340 100 / 6e-25 NEDD8, ATRUB1, RUB1 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G036800
[exp]
229 / 6e-72 AT4G05320 753 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6)
Potri.001G418500
[exp]
229 / 6e-72 AT4G05320 753 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6)
Potri.001G263000
[exp]
229 / 6e-72 AT4G05320 752 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6)
Potri.007G123300
[exp]
229 / 6e-72 AT4G05320 753 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6)
Potri.011G134200
[exp]
229 / 2e-70 AT4G05320 900 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6)
Potri.004G021500
[exp]
215 / 4e-67 AT4G02890 604 / 0.0 Ubiquitin family protein (.1.2.3.4)
Potri.006G129600
[exp]
213 / 2e-66 AT5G20620 600 / 0.0 ubiquitin 4 (.1)
Potri.017G135600
[exp]
211 / 8e-66 AT4G02890 597 / 0.0 Ubiquitin family protein (.1.2.3.4)
Potri.011G026600
[exp]
160 / 8e-47 AT4G05050 452 / 3e-164 ubiquitin 11 (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018367
[exp]
160 / 9e-47 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6)
Lus10008873
[exp]
72 / 4e-15 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
Lus10030894
[exp]
71 / 2e-14 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2)
Lus10030595
[exp]
71 / 2e-14 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2)
Lus10014433
[exp]
44 / 0.0003 AT2G17200 567 / 0.0 ubiquitin family protein (.1)
Lus10010493
[exp]
44 / 0.0003 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1)
Lus10023934
[exp]
43 / 0.0003 AT2G17200 565 / 0.0 ubiquitin family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0072 Ubiquitin PF00240 ubiquitin Ubiquitin family
Representative CDS sequence
>Potri.004G094100.2 pacid=42796235 polypeptide=Potri.004G094100.2.p locus=Potri.004G094100 ID=Potri.004G094100.2.v4.1 annot-version=v4.1
ATGGAACTTCCAACTCCAAGAAATGATTCTCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATGACTATATATTTGAAAGTCATGAAAACGTCGACGA
TGAAAGTTCAGAGATCAGATACAATTGGAACTATCAAATCTGCGTTTTGTGAGAAGGAAGGAATTCCTAAAAGTTTCCAAGAACTTTTTTTTAACGGTGA
CCGGCTCAAGGATGACCAGAGAGTGGTTGATTATGGTATTCCGAAAGATGCCACTCTGCATATGATTCTTCAGAGTTCAGTTGGGGTGAAATTGTTAGTC
GTTATACCATCACGCCAGAAAAGTGTTGTGGTTGAAGCAAGGACTTATGATACCGTCCAAAAAATTAAGGCTGTAATTCTTGAGAAGGAACAAATTCTTC
CACATCAGTACAATCTTGTCTATGCTGGAGAAGTGCTCGAAGATGATAGGAGTTTGGCCTCTCTGAATTTGCAAAGCGAGCCAACCCTTCATTTGATTTT
CAATCCGAAAGATTTGTTGTCATTTTCTGTAATCACACCTGCAGGGGAAACTGTGAAGCTCAAAGTTAAATTCCTGTATTCTGTTTCTGAGGTCAAAGCA
ATAATTGGTGGCGTGATTGGTGTCCCAGTCAGTGATTATGATCTAATCTACCAAGGCAAGAAGCTTGAGGATTCCAATTCATTGGCTTGTTGTGACCTCC
AAGAAGAATCTATCTTGGAGATGTCACCCCAGACATTTCAGGTATTTGTGAAGGCGTGGAGTGGGAAAACCATAACTCTGAATGTTCACCAACGTGATAC
TGTTGAAGATGTGAAGGACAAGATTTTCCAAAAGCTTGGCGGGCCAAGCTATTGTCAGAGCATTGTATTTTCTGGAAAGCGACTTGAGGCAAACCTTGAT
CTGGCATATTACAACATCAGGAAGAATGCTACCCTTCATATGGTTTTCTCACCTTCAACAATAACCACCAAAATGGGATTGTCTCAAATCGGGGCTGAAC
CGAACTCCTCCGCTAGAATACGTGATTTAAAGGCTATGATCCAAAATAAACTTCCCAGCACGGTAAAGGAAGTATATTTCCGTGAGATACCACTGCAGGA
TGAGTGCTCTATAGCTAGTTACAACATCGGTGAAAGTGATGAGCTGACTGTTGTTTCTGAACAGCGCTGGTAA
AA sequence
>Potri.004G094100.2 pacid=42796235 polypeptide=Potri.004G094100.2.p locus=Potri.004G094100 ID=Potri.004G094100.2.v4.1 annot-version=v4.1
MELPTPRNDSQEEEEEEEEEEMTIYLKVMKTSTMKVQRSDTIGTIKSAFCEKEGIPKSFQELFFNGDRLKDDQRVVDYGIPKDATLHMILQSSVGVKLLV
VIPSRQKSVVVEARTYDTVQKIKAVILEKEQILPHQYNLVYAGEVLEDDRSLASLNLQSEPTLHLIFNPKDLLSFSVITPAGETVKLKVKFLYSVSEVKA
IIGGVIGVPVSDYDLIYQGKKLEDSNSLACCDLQEESILEMSPQTFQVFVKAWSGKTITLNVHQRDTVEDVKDKIFQKLGGPSYCQSIVFSGKRLEANLD
LAYYNIRKNATLHMVFSPSTITTKMGLSQIGAEPNSSARIRDLKAMIQNKLPSTVKEVYFREIPLQDECSIASYNIGESDELTVVSEQRW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G05320 UBQ10 polyubiquitin 10 (.1.2.3.4.5.6... Potri.004G094100
[exp]
0 1
AT4G28440 Nucleic acid-binding, OB-fold-... Potri.017G014400
[exp]
2.44 0.8247
AT1G60420 DC1 domain-containing protein ... Potri.010G059900
[exp]
4.24 0.8089
AT1G01360 PYL9, RCAR1 PYRABACTIN RESISTANCE 1-LIKE 9... Potri.014G097100
[exp]
5.65 0.8052
AT5G25110 CIPK25, SnRK3.2... SNF1-RELATED PROTEIN KINASE 3.... Potri.003G181900
[exp]
8.00 0.7768
AT1G60420 DC1 domain-containing protein ... Potri.010G059700
[exp]
10.24 0.7810
AT4G35580 NAC NTL9, CBNAC NAC transcription factor-like ... Potri.002G182000
[exp]
10.95 0.7965
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Potri.013G104100
[exp]
12.24 0.8121
AT4G35580 NAC NTL9, CBNAC NAC transcription factor-like ... Potri.002G182300
[exp]
12.64 0.7747
AT3G11710 ATKRS-1 lysyl-tRNA synthetase 1 (.1) Potri.018G090400
[exp]
12.64 0.8029
Potri.001G058500
[exp]
13.49 0.7676

Potri.004G094100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.