Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66730 1656 / 0 AtLIG6 DNA LIGASE 6 (.1) AT1G08130 495 / 2e-157 ATLIG1 DNA ligase 1 (.1) AT1G49250 429 / 1e-134 ATP-dependent DNA ligase (.1) AT2G45700 214 / 1e-57 sterile alpha motif (SAM) domain-containing protein (.1) AT3G26680 188 / 4e-51 SNM1, ATSNM1 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3) AT1G27410 119 / 3e-28 DNA repair metallo-beta-lactamase family protein (.1) AT5G57160 87 / 8e-17 ATLIG4 DNA ligase IV (.1) AT5G17360 72 / 4e-14 unknown protein AT1G19025 74 / 3e-13 DNA repair metallo-beta-lactamase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G005900 [exp] 511 / 2e-163 AT1G08130 1073 / 0.0 DNA ligase 1 (.1) Potri.006G218300 [exp] 216 / 2e-58 AT2G45700 732 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Potri.014G139600 [exp] 204 / 1e-56 AT3G26680 556 / 0.0 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3) Potri.013G149650 [exp] 99 / 7e-22 AT1G27410 396 / 5e-137 DNA repair metallo-beta-lactamase family protein (.1) Potri.018G141900 [exp] 85 / 4e-16 AT5G57160 1372 / 0.0 DNA ligase IV (.1) Potri.002G235950 [exp] 68 / 5e-14 AT1G66730 62 / 4e-13 DNA LIGASE 6 (.1) Potri.013G121700 [exp] 69 / 1e-12 AT1G27410 315 / 3e-107 DNA repair metallo-beta-lactamase family protein (.1) Potri.007G106700 [exp] 70 / 6e-12 AT1G19025 571 / 0.0 DNA repair metallo-beta-lactamase family protein (.1) Potri.013G121201 [exp] 56 / 2e-09 AT1G27410 100 / 1e-26 DNA repair metallo-beta-lactamase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017623 [exp] 1816 / 0 AT1G66730 1584 / 0.0 DNA LIGASE 6 (.1) Lus10016149 [exp] 492 / 4e-156 AT1G08130 1015 / 0.0 DNA ligase 1 (.1) Lus10021418 [exp] 486 / 1e-153 AT1G08130 1015 / 0.0 DNA ligase 1 (.1) Lus10033580 [exp] 471 / 1e-151 AT1G66730 456 / 1e-146 DNA LIGASE 6 (.1) Lus10038078 [exp] 229 / 1e-62 AT2G45700 767 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Lus10020013 [exp] 72 / 4e-12 AT5G57160 1352 / 0.0 DNA ligase IV (.1) Lus10013876 [exp] 63 / 1e-09 AT1G19025 478 / 7e-165 DNA repair metallo-beta-lactamase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0078 [poplar] [flax] DNA_ligase PF01068 [poplar] [flax] DNA_ligase_A_M ATP dependent DNA ligase domain CL0078 [poplar] [flax] PF04675 [poplar] [flax] DNA_ligase_A_N DNA ligase N terminus CL0021 [poplar] [flax] OB PF04679 [poplar] [flax] DNA_ligase_A_C ATP dependent DNA ligase C terminal region CL0398 [poplar] [flax] RMMBL_DRMBL PF07522 [poplar] [flax] DRMBL DNA repair metallo-beta-lactamase
Representative CDS sequence Show only first row Show all	>Potri.004G094200.2 pacid=42796062 polypeptide=Potri.004G094200.2.p locus=Potri.004G094200 ID=Potri.004G094200.2.v4.1 annot-version=v4.1 ATGGCCTTTCAATCCGATCACCAAACCCCACAGTCCATAAACTCACAAACCCTATACTACAAATCCCTCACTTCACTTTCCCTCCAAATCCCTCCAACCC CATCATCCTTCCTCCCTCTCCCTCCTTCTCTCCCTCCTTCAAAACTCATCCCCAAAACCCGTTTCCTCATCGACGGATTCCGCTTTTCCTCCCCTTCCAT TACTGCCTACTTCCTCTCCCACTTCCATTCTGACCATTACACTGGTCTTTCCTCTCATTGGTCTCAAGGTATCATTTTTTGTTCCCCAATCACTACCTCT CTTGTTACTAGTATCCTTAATGTCCCTGAATGTTTTGTCTTTTCGCTTCCTCTGAATCGTGCTGTTGATATTGATGGTGTTGAAGTTAGTTTAGTTGATG CTAATCACTGTCCTGGCGCTGTTCAGTTCTTGTTGAAAGTGCCCATTTGTAAGAATTTAGATAATTTTGAGTTGTATGTTCATACTGGTGATTTTAGGTA CTCTTGTGAGATGAAAGATGATGTTTTTTTGAGAGGTTTTGTGGGGTGTAATACGGTTTTTTTGGATACTACTTATTGTAATCCGAAATTTGTGTTTCCT TTACAAGAGGAGTCGGTTGATTATGTTGTTAGTGCGATTGAGAAGATAGGAGGAGAGGGGTTCAGTGGGGGTTTGGAGAAGAGGGTTCTGTTCCTCGTGG CTACTTATGTGGTGGGGAAAGAAAAGATTTTGATTGAGATTGCACGGAGGTGTAATAGGAAGGTCTATGTGGATGCCAGGAAAATGGAGGTTTTGAGGGT TTTGGGGTGCGGGGAGAGTGGGGTGTTTACAGAGGATGAGAATGAGAGTGATGTGCATGTTGTTGGCTGGAATGTCTTGGGGGAAACTTGGCCTTATTTT CGGCCGAATTTTGTGAAAATGAAGGAAATTATGGTGGAAAGAGGTTACAATAAGGTTGTGGGGTTTGTGCCAACTGGGTGGACATACGAAGTGAAACGTA ATAAGTTTGCAGTGAGATCAAAGGATTCATGTGAGATTCATCTTGTGCCATATAGTGAGCATTCAAATTACAATGAACTCAGGGAGTATGTGAAGTTTTT GAGACCTAAACGTGTCATTCCTACTGTTGGTGTGGATGTTGAAAAACTCGATAGTAAACATGCTGCTAAAATGCAGAAGCATTTTGCTGGGTTAGTTGAC GAGATGGCTAATAAGAAGGAATTTTTAATGGGTTTTCTTCGTGGGTCGTCTGAGAATGATAAGAAGGTTGAAATGGATGCTGTCTCAGGCTTGAACGAGG GGCTGGCGCAGGAGAAAGAGTTAGTGGAGTCAGTTGAAATGAAAGCCCATGAGAATAATGACACTGTTGCTTGTCTCAACTCCTCATCTATACTGCAAGA ATCTCCTACACACAATTTAAGCATGCTAAATGATGAGGAAAGAGATAAACTCGTTCATGAATTGAGTGATTGTTTGCCCACATGGGTTACCCGAGACCAA ATGTTAGATTTAATCAGCACTCATGGGAGGAATATTGTTGAAGCAGTTTCTAGCTTTTATGAACGTGAAATGGAATTCCATGATCAAGTAATTTCTTGTA GAGTAACTGTTTCTTCATCTGAGACAGTTCCATTATATGACTCTGAATCACCTTCAAAACCAGCTTCTATTAATACTGATAGTCGAAGTATGGGTTTTCT GTCAGGTCAAAACTACAAGTCACCTAGCAAGAATCCTAAACTAAAGGGTGGTAATTCTCCTGGAAAAAGGAAGAGGAGCGTTGGCAATAAGCCTGGCAAG AAATCAAAAATTAATTCAAAGCTGGAATCTGGCTTGTCGAAGCAATCCACCATTACTAAGTTTTTCAATAAAGTTTTGCCTGATGCTTCTCAAGTTAGTG TGGTTGCATCTATATCTGAGCAATGCCCTGGAGATGAAAATTTGTTGCAAAATGATGATGTTACAGAGTCATACAGGGAGGAGGTAGATCAGTTTATTCA GATAATTGATGGCAATGAGTCAACAAGAAGTTATGCTGCCACCATCCTCAAGAAGACAGAAGGAGATATTAACAAGGCTCTGGACATGCATTATGGTGAT CCCATGGGTAACCTTGGCAAGAGTATAGAGGCTTTGGTGGTTTCTGGCAATATGGTTGAGCGCCAGTGCGAAACTGGCTCCTCTTCTGCCAGGGAGAAAG AATTGTTTGGAGAAATAGAAAATATGGTTGATCTATCCGTTCAGGGATCATTAATAAAAAACGTGGATGCAACTCTTGTATCACTACCAACAGAAAAATA TAATCCCATAGAGCATGCATGCTGGAATGGTGGACAACCTGCACCATATATCCATCTTGCACGTGCTTTTGACCTGGTCGAGGCAGAAAAAGGAAAGATC AAAGTTACTTCGTTATTGTGCAATATGTTTAGAAGTTTGCTGGCATTGTCTCCTGAGGATGTGCTGCCTGCTGCCTATCTGTGCACAAATAAGATTGCTG CTGACCATGAAAATGTGGAACTAAACATAGGTGGAACCTTGGTTACATCGGCTTTGGAAGAGGCATGTGGAACAAAGCGGTCTAAAATAAGGGAAATGTA CAATAGTATGGGGGATCTTGGTGACGTTGCTCAAGTATGCCGACAAACACAGACATTACTGGCTCCTCCTCCTCCCCTTCTTATTAAAGATGTATTTTCT GCGCTGCAGAAGATAAGTGTACAAACAGGTAGTGGAAGTACTGGTCGAAAGAAGAGCCTCATTGTGAATCTTATGCGTTCTTGTAGGGAGAAGGAGATGA AGTTTATTGTCAGAACTTTGGTAAGGAATTTACGGATTGGAGCAATGATGAGAACTATCCTACCTGCTTTAGCTCAAGCTGTTGCTTTGAATTCCTTTTC TTCTGATGAATGTAAAGCTGAGAATGTGAAGGAGAAACTTCAGTACATTTCCACAGCAGTGGTTGAAGCTTATAACATCCTTCCTACTCTGGATTTGGTT GTTCCTTCACTCATAAATGAAGGCGTTGGATTTTCATCGTCAACTTTATCAATGGTTGCTGGGATACCTCTTAAACCAATGCTTGCAAAAATTACAAATG GAGTTGCTCAAGTACTAAAGCTCTTTGAAAATAAAGCTTTTACATGTGAATACAAATACGATGGTCAGCGTGCCCAAATTCACAAAATGCCAAATGGCAC TGTACGTATATATTCACGAAATGGGGATGAAACAACTTCTAGGTTTCCTGATTTGATCAAGATAATTGAGGAATCTTGTAAACCTGCTGCAGCGACTTTA ATAGTGGATGCAGAGGTAGTTGCAGTTGATAGAAAGAATGGCTGCAAGCTCATGTCCTTTCAAGAGCTATCTTCAAGGGAGAGAGGGAGCAAAGATTCTT CCATTGCTGTGAATAAGATAAAGGTTGATATATGCGTGTTTGTCTTTGATATCATGTTTGCTAATGGAGAACAGCTGTTGGAGCTTCCTCTCCGCCAAAG GCGACAATACTTGAAAGACTTGTTTTGTGATGAGAGATTAGGTTGTTTTGAATATGCGAAGGAGATGACGGTTGAAGCACAGGATGCTTGTTTGACCAAT GATGCAACTTTGACCAAGATGAAATCTTTCCTTGAAGATGCATTGCGGTCCTCGTGTGAAGGGATTATGGTGAAATCTCTAGATATCGATGCTGGATACT GTCCATCAAAACGGACTGACGCATGGTTAAAGGTCAAGAAGGATTATGTTGAAGGACTGAATGATTCTCTTGATTTAGTCCCGATTGGTGCTTGGCATGG AAATGGGAGAAAAGCAGGATGGTATAGTCCATTCCTCATGGCATGCTACAACCCTGAGACTGAGGAATTCCAAAGTGTGTGCCGTGTCATGTCTGGGTTC TCAGATGCTTTTTATATAGAGATGAAAGAATTCTTCTCTGGAGATAGGATCTTGGCCAAAAAGCCACCATACTATCGAACTGTGGAGGCGCCGGATATGT GGTTTTCTCCAGAAGTTGTTTGGGAAATAAGAGGTGCTGACTTTACAATTTCACCTGTTCACCAGGCTGCTGTAGGTTTAGTTCATCAATCTCGTGGCAT CTCAATCAGATTTCCAAGATTTATTCACTCCATATCGGATAGAAATCCAGAGGAATGTAGCACAGCAGCAGATATAGCTGAAATGTTTAATTCTCAAACA AGGAAGATGGACGTGACAGCTGAAAGATGA
AA sequence Show only first row Show all	>Potri.004G094200.2 pacid=42796062 polypeptide=Potri.004G094200.2.p locus=Potri.004G094200 ID=Potri.004G094200.2.v4.1 annot-version=v4.1 MAFQSDHQTPQSINSQTLYYKSLTSLSLQIPPTPSSFLPLPPSLPPSKLIPKTRFLIDGFRFSSPSITAYFLSHFHSDHYTGLSSHWSQGIIFCSPITTS LVTSILNVPECFVFSLPLNRAVDIDGVEVSLVDANHCPGAVQFLLKVPICKNLDNFELYVHTGDFRYSCEMKDDVFLRGFVGCNTVFLDTTYCNPKFVFP LQEESVDYVVSAIEKIGGEGFSGGLEKRVLFLVATYVVGKEKILIEIARRCNRKVYVDARKMEVLRVLGCGESGVFTEDENESDVHVVGWNVLGETWPYF RPNFVKMKEIMVERGYNKVVGFVPTGWTYEVKRNKFAVRSKDSCEIHLVPYSEHSNYNELREYVKFLRPKRVIPTVGVDVEKLDSKHAAKMQKHFAGLVD EMANKKEFLMGFLRGSSENDKKVEMDAVSGLNEGLAQEKELVESVEMKAHENNDTVACLNSSSILQESPTHNLSMLNDEERDKLVHELSDCLPTWVTRDQ MLDLISTHGRNIVEAVSSFYEREMEFHDQVISCRVTVSSSETVPLYDSESPSKPASINTDSRSMGFLSGQNYKSPSKNPKLKGGNSPGKRKRSVGNKPGK KSKINSKLESGLSKQSTITKFFNKVLPDASQVSVVASISEQCPGDENLLQNDDVTESYREEVDQFIQIIDGNESTRSYAATILKKTEGDINKALDMHYGD PMGNLGKSIEALVVSGNMVERQCETGSSSAREKELFGEIENMVDLSVQGSLIKNVDATLVSLPTEKYNPIEHACWNGGQPAPYIHLARAFDLVEAEKGKI KVTSLLCNMFRSLLALSPEDVLPAAYLCTNKIAADHENVELNIGGTLVTSALEEACGTKRSKIREMYNSMGDLGDVAQVCRQTQTLLAPPPPLLIKDVFS ALQKISVQTGSGSTGRKKSLIVNLMRSCREKEMKFIVRTLVRNLRIGAMMRTILPALAQAVALNSFSSDECKAENVKEKLQYISTAVVEAYNILPTLDLV VPSLINEGVGFSSSTLSMVAGIPLKPMLAKITNGVAQVLKLFENKAFTCEYKYDGQRAQIHKMPNGTVRIYSRNGDETTSRFPDLIKIIEESCKPAAATL IVDAEVVAVDRKNGCKLMSFQELSSRERGSKDSSIAVNKIKVDICVFVFDIMFANGEQLLELPLRQRRQYLKDLFCDERLGCFEYAKEMTVEAQDACLTN DATLTKMKSFLEDALRSSCEGIMVKSLDIDAGYCPSKRTDAWLKVKKDYVEGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEFQSVCRVMSGF SDAFYIEMKEFFSGDRILAKKPPYYRTVEAPDMWFSPEVVWEIRGADFTISPVHQAAVGLVHQSRGISIRFPRFIHSISDRNPEECSTAADIAEMFNSQT RKMDVTAER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Potri.004G094200 [exp]	0	1
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	2.44	0.8622	Pt-ABA3.1
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.002G232800 [exp]	8.06	0.8157
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Potri.010G026200 [exp]	15.49	0.7941	SPL7.1
AT5G46070			Guanylate-binding family prote...		Potri.017G016800 [exp]	15.68	0.8145
AT3G50430			unknown protein		Potri.005G133500 [exp]	16.12	0.8054
AT3G49725			GTP-binding protein, HflX (.1)		Potri.007G007700 [exp]	18.16	0.8053
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Potri.013G099700 [exp]	18.97	0.7984	SGR2.1
AT1G65440		GTB1	global transcription factor gr...		Potri.001G034300 [exp]	19.28	0.7435
AT1G05270			TraB family protein (.1)		Potri.007G121800 [exp]	19.44	0.8034
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.008G106800 [exp]	22.64	0.7642

Compare expression of checked genes

Potri.004G094200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.