Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17380 905 / 0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT3G48560 155 / 2e-40 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) AT5G54960 45 / 0.0002 PDC2 pyruvate decarboxylase-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G097200 [exp] 162 / 2e-42 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.012G098300 [exp] 159 / 2e-41 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028503 [exp] 934 / 0 AT5G17380 916 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10009141 [exp] 924 / 0 AT5G17380 908 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10016751 [exp] 146 / 4e-37 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10029955 [exp] 142 / 1e-35 AT3G48560 981 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035207 [exp] 128 / 1e-31 AT3G48560 800 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022446 [exp] 81 / 4e-16 AT3G48560 702 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022445 [exp] 76 / 5e-15 AT3G48560 325 / 7e-108 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032041 [exp] 62 / 6e-10 AT3G48560 565 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032040 [exp] 59 / 1e-09 AT3G48560 266 / 2e-85 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0085 [poplar] [flax] FAD_DHS PF00205 [poplar] [flax] TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain CL0254 [poplar] [flax] THDP-binding PF02775 [poplar] [flax] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0254 [poplar] [flax] THDP-binding PF02776 [poplar] [flax] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G094600.1 pacid=42795645 polypeptide=Potri.004G094600.1.p locus=Potri.004G094600 ID=Potri.004G094600.1.v4.1 annot-version=v4.1 ATGGCAGAATCCAATTCCCAAACCACCTCACAAACCCTCATCGACGGCAACACCCTCGCCGCCAAATCTCTCGTCGCCTACGGCATAACCCATATGTTTG GCGTCGTGGGTATTCCGGTAACCTCCTTTGCCAATCGTGCTGTGGCCGCTGGAATCCGTTTCATTGCCTTTCACAACGAGCAATCTGCTGGGTACGCTGC CTCTGCGTACGGTTACCTCACCGGCCGGCCTGGGATTCTCCTAACAGTCTCTGGGCCGGGTTGCGTTCATGGGCTTGCTGGATTGTCTAATGCCATGATT AATACATGGCCTATGGTCTTGATCTCGGGTTCTTGCGATCAAAACGATGTTGGTAGAGGTGATTTTCAAGAACTTAACCAAATTGAAGCTGCAAAACCGT TTTCCAAACATTTAGGTAAAGCTAAAGACATTAAAGAAATACCTAAATGTTTTTTTGAAGCGCTTGATTCTGCTGTTTTGGGCCGGCCTGGTGGGTGTTA CTTAGATCTTCCAACTGATGTTTTGCATCAGACAATATCGGAATCCGAGGCGGATAGTTTGATAAAATCTGCTGCGGATGTTTCAGAAATTGAAAAGGGT GCGAAAAAGATTACTACTGCAAGTTTGGAAGTTGAAAGGGCGGTGGATTTGCTTAGAAATGCTGAAAGGCCATTGATTGTGTTTGGAAAAGGTGCTGCTT ATGCCCGTGCGGAGAATGAGTTGAAGAGATTAGTGGAAAGTACTGGGATTCCGTTTTTGCCAACCCCTATGGGAAAAGGGTTGTTGCCTGATACACATGA ACTTGCTGCTAGTGCCGCGAGGTCACTTGCTATTGGGAAATGCGATGTCGCGCTTGTGGTTGGCGCGAGGCTTAATTGGTTGTTGCATTTTGGGGAACCG CCAAAGTGGTCTAAGGATGTGAAATTTATTTTGGTTGATGTTAGCGAGGAGGAGATTGAGTTGAGGAAGCCACATTTGGGCTTAGTTGGAGATGCAAAAA AGGTGTTGGAATTGGTAAATAAGGAGATCAAGGAGGATCCTTTTTGTTTGGGGAAGAATCATCCGTGGTTGGAGGCGATTTCAAAGAAGGCTAGGGACAA TGTGTCGAGAATGGAGGCACAGCTGGCTAAGGATGTTGTGCCGTTTAATTTTTTGACGCCAATGAGGATTATTAGAAATGCGATCTTAGAAGTGGGGAGT CCTGCACCGGTATTGGTTTCAGAGGGGGCGAATACAATGGATGTTGGCAGAGCTGTTTTGGTTCAGACCGAGCCAAGGACGAGGTTGGATGCTGGAACTT GGGGGACTATGGGTGTTGGTTTGGGTTATTGCATTGCCGCTGCAGTTGCTGAGCCTCATCGCCTTGTGGTTGCAGTTGAGGGCGACTCTGGATTTGGGTT CAGTGCGATGGAAGTTGAGACATTGGTTCGTTACCAGCTGCCCGTGGTCGTGATAGTTTTTAACAATGGTGGTGTTTATGGTGGTGATCGGAGGAACCCT GAAGAAATTACAGGGCCTTTTAAAGATGATCCAGCACCCACTTCTTTTGTCCCTGGCGCTTCTTATCATGTTTTAATTGAAGCTTTCGGGGGGAAGGGTT ATCTTGTCGGGACACCTGATGAACTCAAGTCTGCCCTTTCTGAATCCTTCACTGCAAGAAAGCCAGCTGTAATAAATGTCACCATCGACCCTTATGCTGG TGCGGAAAGTGGTAGGATGCAGCACAAAAACTGA
AA sequence Show only first row Show all	>Potri.004G094600.1 pacid=42795645 polypeptide=Potri.004G094600.1.p locus=Potri.004G094600 ID=Potri.004G094600.1.v4.1 annot-version=v4.1 MAESNSQTTSQTLIDGNTLAAKSLVAYGITHMFGVVGIPVTSFANRAVAAGIRFIAFHNEQSAGYAASAYGYLTGRPGILLTVSGPGCVHGLAGLSNAMI NTWPMVLISGSCDQNDVGRGDFQELNQIEAAKPFSKHLGKAKDIKEIPKCFFEALDSAVLGRPGGCYLDLPTDVLHQTISESEADSLIKSAADVSEIEKG AKKITTASLEVERAVDLLRNAERPLIVFGKGAAYARAENELKRLVESTGIPFLPTPMGKGLLPDTHELAASAARSLAIGKCDVALVVGARLNWLLHFGEP PKWSKDVKFILVDVSEEEIELRKPHLGLVGDAKKVLELVNKEIKEDPFCLGKNHPWLEAISKKARDNVSRMEAQLAKDVVPFNFLTPMRIIRNAILEVGS PAPVLVSEGANTMDVGRAVLVQTEPRTRLDAGTWGTMGVGLGYCIAAAVAEPHRLVVAVEGDSGFGFSAMEVETLVRYQLPVVVIVFNNGGVYGGDRRNP EEITGPFKDDPAPTSFVPGASYHVLIEAFGGKGYLVGTPDELKSALSESFTARKPAVINVTIDPYAGAESGRMQHKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17380			Thiamine pyrophosphate depende...		Potri.004G094600 [exp]	0	1
AT5G15870			glycosyl hydrolase family 81 p...		Potri.004G105300 [exp]	2.64	0.8317
AT5G19380		CLT1	CRT (chloroquine-resistance tr...		Potri.009G069400 [exp]	2.82	0.8007
AT2G05710		ACO3	aconitase 3 (.1)		Potri.002G229200 [exp]	3.87	0.7863
AT4G16260			Glycosyl hydrolase superfamily...		Potri.010G142800 [exp]	4.47	0.7859	HGN1.1
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Potri.019G018500 [exp]	8.66	0.7463
AT5G64250			Aldolase-type TIM barrel famil...		Potri.017G051800 [exp]	11.40	0.7482
AT3G19990			unknown protein		Potri.007G001200 [exp]	14.00	0.7757
					Potri.017G153100 [exp]	14.69	0.7456
AT5G05340			Peroxidase superfamily protein...		Potri.013G156500 [exp]	20.12	0.7717	Pt-PRX1.15
AT1G77840			Translation initiation factor ...		Potri.017G122200 [exp]	25.29	0.6826

Compare expression of checked genes

Potri.004G094600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.