Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64820 76 / 1e-17 MATE efflux family protein (.1) AT2G04050 76 / 2e-17 MATE efflux family protein (.1) AT2G04080 74 / 7e-17 MATE efflux family protein (.1) AT2G04090 74 / 1e-16 MATE efflux family protein (.1) AT2G04040 72 / 4e-16 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT2G04070 72 / 6e-16 MATE efflux family protein (.1) AT1G71140 71 / 1e-15 MATE efflux family protein (.1) AT1G15150 71 / 2e-15 MATE efflux family protein (.1) AT2G04100 71 / 2e-15 MATE efflux family protein (.1) AT1G15160 70 / 2e-15 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G093400 [exp] 99 / 8e-26 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.004G094700 [exp] 97 / 4e-25 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.017G120500 [exp] 96 / 2e-24 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.017G120400 [exp] 87 / 4e-21 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.010G116900 [exp] 82 / 1e-19 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G094900 [exp] 78 / 3e-18 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.012G051900 [exp] 72 / 7e-16 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.017G120600 [exp] 71 / 9e-16 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.010G116700 [exp] 69 / 5e-15 AT5G52450 558 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009132 [exp] 84 / 3e-20 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10029694 [exp] 78 / 4e-18 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 78 / 6e-18 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10009140 [exp] 77 / 2e-17 AT1G64820 560 / 0.0 MATE efflux family protein (.1) Lus10028504 [exp] 77 / 2e-17 AT1G64820 556 / 0.0 MATE efflux family protein (.1) Lus10028904 [exp] 76 / 3e-17 AT1G71140 231 / 1e-94 MATE efflux family protein (.1) Lus10008911 [exp] 73 / 2e-16 AT1G71140 430 / 1e-147 MATE efflux family protein (.1) Lus10018135 [exp] 72 / 7e-16 AT1G15170 524 / 0.0 MATE efflux family protein (.1) Lus10041994 [exp] 71 / 2e-15 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 70 / 3e-15 AT1G71140 571 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.004G094650.1 pacid=42794385 polypeptide=Potri.004G094650.1.p locus=Potri.004G094650 ID=Potri.004G094650.1.v4.1 annot-version=v4.1 ATGGAAGAGGTGGAAGAGATCGGGAAAGAGAGGAAATGGCTGATAACATGGGGTGGATTTGTGGAGGAGCTCAAGGAGGTGAGCTACATAGCTGCACCAA TGGTGGCTGTTACGGTGTTGCAGTATCTACTACAAGTTGTGTCTGTAATAATCGTAGGACACCTTGGTCAGCTCGCCCTCTCTGGTGTTGCCCTAGCCAC CTCCATCAACAATGTTACTGGATTTAGCCTACTTGTTAGGGGTGGTGTCTATCCTGTAAACTCTCGTGCGTGCAAGCTCAATGTGGACGCGGACACTCAA GCATCTCCCTAA
AA sequence Show only first row Show all	>Potri.004G094650.1 pacid=42794385 polypeptide=Potri.004G094650.1.p locus=Potri.004G094650 ID=Potri.004G094650.1.v4.1 annot-version=v4.1 MEEVEEIGKERKWLITWGGFVEELKEVSYIAAPMVAVTVLQYLLQVVSVIIVGHLGQLALSGVALATSINNVTGFSLLVRGGVYPVNSRACKLNVDADTQ ASP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04050			MATE efflux family protein (.1...		Potri.004G094650 [exp]	0	1
					Potri.016G037100 [exp]	1.00	0.9214
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.016G049600 [exp]	7.21	0.8712	PGIP.2
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.004G017800 [exp]	8.71	0.8021
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Potri.010G042400 [exp]	11.48	0.8596	Pt-INO.2
					Potri.002G228101 [exp]	12.48	0.6298
AT4G38040			Exostosin family protein (.1)		Potri.007G117800 [exp]	15.00	0.7053
AT1G04645			Plant self-incompatibility pro...		Potri.018G148366 [exp]	17.23	0.8526
AT5G67060	bHLH	HEC1, bHLH088	HECATE 1, basic helix-loop-hel...		Potri.007G044600 [exp]	20.24	0.8496
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Potri.006G022200 [exp]	22.24	0.8491	Pt-CYP709.2
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Potri.002G029400 [exp]	22.80	0.8359

Compare expression of checked genes

Potri.004G094650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.