Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04100 479 / 3e-167 MATE efflux family protein (.1) AT1G71140 477 / 2e-166 MATE efflux family protein (.1) AT2G04090 471 / 2e-164 MATE efflux family protein (.1) AT2G04080 471 / 2e-164 MATE efflux family protein (.1) AT2G04070 471 / 3e-164 MATE efflux family protein (.1) AT1G66780 469 / 1e-163 MATE efflux family protein (.1) AT1G66760 469 / 2e-163 MATE efflux family protein (.1.2) AT2G04040 464 / 2e-161 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT2G04050 462 / 6e-161 MATE efflux family protein (.1) AT1G64820 460 / 2e-159 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G094900 [exp] 837 / 0 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.017G120600 [exp] 715 / 0 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.017G120500 [exp] 599 / 0 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.017G120400 [exp] 594 / 0 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.010G116900 [exp] 518 / 0 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 477 / 6e-166 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 474 / 2e-165 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.019G075800 [exp] 465 / 6e-163 AT1G71140 407 / 2e-139 MATE efflux family protein (.1) Potri.004G093400 [exp] 464 / 1e-161 AT1G71140 482 / 8e-168 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009140 [exp] 552 / 0 AT1G64820 560 / 0.0 MATE efflux family protein (.1) Lus10028504 [exp] 546 / 0 AT1G64820 556 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 484 / 6e-169 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 483 / 9e-169 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 477 / 3e-166 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10018135 [exp] 459 / 2e-159 AT1G15170 524 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 442 / 1e-152 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10018134 [exp] 456 / 2e-152 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 449 / 1e-149 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10006171 [exp] 436 / 1e-148 AT1G71140 452 / 5e-154 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.004G094800.3 pacid=42795176 polypeptide=Potri.004G094800.3.p locus=Potri.004G094800 ID=Potri.004G094800.3.v4.1 annot-version=v4.1 ATGGTGGTGGTGACGGTGTCACTACACTTGTTGCAGGTTGTGTCAATAATGATGGCAGGGCATCTTGGTGAATTGTCTCTCTCTGGGGTCTCTATCGGTG GATCTTTTGCTGGGGTCACTGGCTTTAGTCTCCTATTTGGATTGGCAGGAGGCTTGGAAACTCTATGTGGACAAGCTTATGGAGCAGGGCAATACCAAAA GTTTGGAACTTATACATACTGTGCAATAATATCTCTCCTTCCAATATGTGTCCCAGTATCTATCCTTTGGATATTCATGGACAGGATATTGATAGCAATA GGCCAAGACCCTGAAATCTCAACGGTAGCCTGCCGATATGCTACCTGTCTCATTCCTGCGTTATTTGCCTATGCTGTTCTTCAGTCGCTACTTCGCTACT ACCAGTCTCAGGGCTTGATTCTACCAATGCTTTTCAGCACCTGTGCAACTTTATGTTTCCATATACCTCTTTGCTGGGCTCTAATATTTAAATGGGAACT AGGAAGTACCGGAGCAGCATTAGCCATTGACGTGTCTTACTGGTTAAATGTGGTATTCCTTGCACTTTATATGGGGTTCTCTTCATCCTGCAAAAAGACC CGTGTCATCTACTGGAATCATATTTTCTCTAGCATTAAGGAGTTCTTTCGCTTCGCTCTCCCTTCTGCTGTAATGGTTTGTCTTGAATGGTGGACCTTTG AGCTACTTATATTGCTGGCTGGACTTCTGCCAGATTCACAGCTTGAAACATCTGTTCTTTCTATCTGCCTAGCAACAACGTCATTGCACTTCTATGCACT ATCTGGGATCGCAGCTGCTGGGAGTGCTCAGGTTTCAAATCATCTAGGAGCTGGAAATGATAAGGCAGCTCAAGTGGTTGTCCGTGCAGTACTGAGTATT TCGCTCGTAGAGGCAGTTATTGTGAGCACAAATATCTTCTGCTTCCGCCATGTTTTTGGATACGCTTTCAGCAATGAAAAGGTGGTTGTCGACTATGTAA CTGAAGTGGCTCCCCTGCTTTGTCTCTCAGTTATTGTGGATAGCTTACAAACAGTACTTTCCGGAATTGCTAGAGGATGTGGATGGCAGCACATAGGGGC CTCTATTAACCTTGGGGCATACTATTTTGCTGGAATCCCAGTAGCTATTCTACTGTGCTTCATTTTCCATCTTAGAGGGAAAGGCCTTTGGATTGGGGTG CTGACTGGGAGTACTGTGCAAGCAACATTACTAGCTCTCATAACTGGTTCGACAAATTGGAAAAAACAGGCATCCAAGGCTAGGGAGAGGATGCTTGATG GGACAGCTTCGGCTGATAATGGATTTCCTTGA
AA sequence Show only first row Show all	>Potri.004G094800.3 pacid=42795176 polypeptide=Potri.004G094800.3.p locus=Potri.004G094800 ID=Potri.004G094800.3.v4.1 annot-version=v4.1 MVVVTVSLHLLQVVSIMMAGHLGELSLSGVSIGGSFAGVTGFSLLFGLAGGLETLCGQAYGAGQYQKFGTYTYCAIISLLPICVPVSILWIFMDRILIAI GQDPEISTVACRYATCLIPALFAYAVLQSLLRYYQSQGLILPMLFSTCATLCFHIPLCWALIFKWELGSTGAALAIDVSYWLNVVFLALYMGFSSSCKKT RVIYWNHIFSSIKEFFRFALPSAVMVCLEWWTFELLILLAGLLPDSQLETSVLSICLATTSLHFYALSGIAAAGSAQVSNHLGAGNDKAAQVVVRAVLSI SLVEAVIVSTNIFCFRHVFGYAFSNEKVVVDYVTEVAPLLCLSVIVDSLQTVLSGIARGCGWQHIGASINLGAYYFAGIPVAILLCFIFHLRGKGLWIGV LTGSTVQATLLALITGSTNWKKQASKARERMLDGTASADNGFP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04100			MATE efflux family protein (.1...		Potri.004G094800 [exp]	0	1
AT1G71140			MATE efflux family protein (.1...		Potri.004G094900 [exp]	1.00	0.9814
					Potri.017G018200 [exp]	1.73	0.9438
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Potri.019G090800 [exp]	2.82	0.9553	CLE4.1
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Potri.008G072000 [exp]	6.32	0.9349
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.006G170100 [exp]	6.48	0.9330
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.014G126200 [exp]	7.74	0.9157
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.014G126300 [exp]	7.93	0.9250
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.014G126250 [exp]	8.48	0.9225
AT5G37800	bHLH	ATRSL1, bHLH086	ARABIDOPSIS THALIANA RHD SIX-L...		Potri.017G126800 [exp]	9.38	0.9361
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.002G201900 [exp]	9.48	0.8554

Compare expression of checked genes

Potri.004G094800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.