Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71140 503 / 3e-176 MATE efflux family protein (.1) AT2G04080 491 / 8e-172 MATE efflux family protein (.1) AT2G04100 491 / 1e-171 MATE efflux family protein (.1) AT2G04070 488 / 1e-170 MATE efflux family protein (.1) AT2G04090 485 / 3e-169 MATE efflux family protein (.1) AT1G66760 485 / 4e-169 MATE efflux family protein (.1.2) AT1G64820 479 / 2e-166 MATE efflux family protein (.1) AT1G66780 478 / 2e-166 MATE efflux family protein (.1) AT2G04050 477 / 6e-166 MATE efflux family protein (.1) AT2G04040 476 / 1e-165 ATDTX1 detoxification 1, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G094800 [exp] 837 / 0 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.017G120600 [exp] 755 / 0 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.017G120500 [exp] 627 / 0 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.017G120400 [exp] 625 / 0 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.010G116900 [exp] 541 / 0 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 497 / 2e-173 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 494 / 8e-173 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 489 / 1e-170 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.019G075800 [exp] 465 / 3e-162 AT1G71140 407 / 2e-139 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009140 [exp] 574 / 0 AT1G64820 560 / 0.0 MATE efflux family protein (.1) Lus10028504 [exp] 567 / 0 AT1G64820 556 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 503 / 9e-176 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 502 / 1e-175 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 498 / 3e-174 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10018135 [exp] 481 / 1e-167 AT1G15170 524 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 467 / 6e-162 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10018134 [exp] 473 / 4e-158 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 466 / 1e-155 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10000619 [exp] 452 / 3e-155 AT1G71140 528 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.004G094900.2 pacid=42796040 polypeptide=Potri.004G094900.2.p locus=Potri.004G094900 ID=Potri.004G094900.2.v4.1 annot-version=v4.1 ATGGAAGAGGCACCGCTGCCCAATACTGAAGAGAGGACACGGGCTTCTACTACCTTTGTGGAAGAGCTAAAGAAGGTGACCTACATTGCAGCTCCAATGG TGGTGGTGACGGTGTCACTACACTTGTTGCAGGTTGTGTCACTAATGATGGCAGGGCATCTTGGTGAATTGTCTCTCTCTGGGGTCTCTATCGGTGGATC TTTTGCTGGGGTCACTGGCTTTAGTCTCCTTTTTGGATTGGCAGGAGGCTTGGAAACTCTATGTGGACAAGCTTATGGAGCAGGGCAATACCAAAAGTTT GGAACTTATACATACTGTGCAATAATATCTCTCCTTCCAATATGTGTCCCTGTATCTATCCTTTGGATATTCATGGACAGGATATTGATAGCAATAGGCC AAGACCCTGAAATCTCAACGGTAGCCTGCCGATATGCTACCTGTCTCATTCCTGCGTTATTTGCCTATGCTGTTCTTCAGTCGCTACTTCGCTACTACCA GTCTCAGGGCTTGATTCTACCAATGCTTTTCAGCACTTGTGCAACTTTATGTTTCCATATACCTCTTTGCTGGGCTCTAATATTTAAATGGGAACTAGGA AGTACCGGAGCAGCATTAGCCATTGATGTGTCTTACTGGTTAAATGTGGTATTCCTTGCACTTTATATGGGGTTCTCTTCATCCTGCAAAAAGACCCGTG TCATCTACTGGAATCATATTTTCTCTAGCATTAAGGAGTTCTTTCGCTTCGCTCTCCCTTCTGCTGTAATGGTTTGTCTTGAATGGTGGACCTTTGAGCT ACTTATATTGCTGGCTGGACTTCTGCCAGATTCACAGCTTGAAACATCTGTTCTTTCTATCTGCCTAGCAACAACGTCATTGCACTTCTATGCACTATCT GGGATCGCAGCTGCTGGGAGTGCTCAGGTTTCAAATCATCTAGGAGCTGGAAATGATAAGGCAGCTCAAGTGGTTGTCCGTGCAGTACTGAGTATTTCGC TCGTAGAGGCAGTTATTGTGAGCACAAATATCTTCTGCTTCCGCCATGTTTTTGGATACGCTTTCAGCAATGAAAAGGTGGTTGTCGACTATGTAACTGA AGTGGCTCCCCTGCTTTGTCTCTCAGTTATTGTGGATAGCTTACAAACAGTACTTTCCGGAATTGCTAGAGGATGTGGATGGCAGCACATAGGAGCCTCT ATTAACCTTGGGGCATACTATTTTGCTGGAATCCCAGTAGCTATTCTACTGTGCTTCATTTTCCATCTTAGAGGGAAAGGCCTTTGGATTGGGGTGCTGA CTGGGAGTACTGTGCAAGCAACATTACTTGGTCTCATAACTAGTTTGACAAATTGGAAAAAACAGGCAACCAAGGCTAGGGAGAGGATGCTTGATGGGAC AGCTTCGGCTGATAATGGATTACCTTGA
AA sequence Show only first row Show all	>Potri.004G094900.2 pacid=42796040 polypeptide=Potri.004G094900.2.p locus=Potri.004G094900 ID=Potri.004G094900.2.v4.1 annot-version=v4.1 MEEAPLPNTEERTRASTTFVEELKKVTYIAAPMVVVTVSLHLLQVVSLMMAGHLGELSLSGVSIGGSFAGVTGFSLLFGLAGGLETLCGQAYGAGQYQKF GTYTYCAIISLLPICVPVSILWIFMDRILIAIGQDPEISTVACRYATCLIPALFAYAVLQSLLRYYQSQGLILPMLFSTCATLCFHIPLCWALIFKWELG STGAALAIDVSYWLNVVFLALYMGFSSSCKKTRVIYWNHIFSSIKEFFRFALPSAVMVCLEWWTFELLILLAGLLPDSQLETSVLSICLATTSLHFYALS GIAAAGSAQVSNHLGAGNDKAAQVVVRAVLSISLVEAVIVSTNIFCFRHVFGYAFSNEKVVVDYVTEVAPLLCLSVIVDSLQTVLSGIARGCGWQHIGAS INLGAYYFAGIPVAILLCFIFHLRGKGLWIGVLTGSTVQATLLGLITSLTNWKKQATKARERMLDGTASADNGLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71140			MATE efflux family protein (.1...		Potri.004G094900 [exp]	0	1
AT2G04100			MATE efflux family protein (.1...		Potri.004G094800 [exp]	1.00	0.9814
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Potri.019G090800 [exp]	1.41	0.9701	CLE4.1
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Potri.008G072000 [exp]	2.82	0.9531
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.014G126250 [exp]	3.00	0.9568
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.014G126300 [exp]	4.47	0.9503
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.014G126200 [exp]	4.58	0.9352
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Potri.011G063750 [exp]	4.69	0.9228
AT3G07620			Exostosin family protein (.1)		Potri.014G170900 [exp]	6.70	0.9198
AT5G22410		RHS18	root hair specific 18 (.1)		Potri.001G218500 [exp]	8.36	0.9259
AT5G37800	bHLH	ATRSL1, bHLH086	ARABIDOPSIS THALIANA RHD SIX-L...		Potri.017G126800 [exp]	9.16	0.9487

Compare expression of checked genes

Potri.004G094900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.