Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34260 442 / 3e-156 WDR55 human WDR55 \(WD40 repeat\) homolog, transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 74 / 1e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 62 / 1e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G73720 60 / 8e-10 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT1G71840 51 / 6e-07 transducin family protein / WD-40 repeat family protein (.1) AT1G15440 50 / 1e-06 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT3G18140 49 / 3e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G21390 49 / 4e-06 Coatomer, alpha subunit (.1) AT5G08390 48 / 1e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15980 47 / 2e-05 Coatomer, beta' subunit (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G120100 [exp] 627 / 0 AT2G34260 432 / 2e-152 human WDR55 \(WD40 repeat\) homolog, transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G096900 [exp] 72 / 1e-13 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 64 / 3e-11 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 61 / 2e-10 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 52 / 3e-07 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 51 / 5e-07 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 49 / 3e-06 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.003G056300 [exp] 48 / 7e-06 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.001G179200 [exp] 48 / 8e-06 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033342 [exp] 496 / 3e-177 AT2G34260 454 / 2e-160 human WDR55 \(WD40 repeat\) homolog, transducin family protein / WD-40 repeat family protein (.1.2) Lus10034796 [exp] 447 / 2e-158 AT2G34260 424 / 1e-149 human WDR55 \(WD40 repeat\) homolog, transducin family protein / WD-40 repeat family protein (.1.2) Lus10012230 [exp] 68 / 1e-12 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10033092 [exp] 68 / 4e-12 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10002860 [exp] 66 / 1e-11 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 65 / 2e-11 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 59 / 1e-09 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10038425 [exp] 57 / 9e-09 AT1G73720 956 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10023381 [exp] 55 / 4e-08 AT1G73720 953 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10042333 [exp] 49 / 2e-06 AT3G18140 572 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.004G095000.8 pacid=42795303 polypeptide=Potri.004G095000.8.p locus=Potri.004G095000 ID=Potri.004G095000.8.v4.1 annot-version=v4.1 ATGGAGATAGACTTAGGAAAAGTTCCGTTTACCATGGATTTCCATCCTTCAGATAATCTAGTGACTGCAGGTCTGATCACTGGCGACCTTCACCTATACC GTTTCAATGCTGATTCCTCGCCACAAAGATTGTTGGAAATTCATGCTCATAGTGAGGCTTGTAGAGCTGCTAGATTCATCAATGATGGACAAGCAATTAT CACGGGTTCTAGTGATCGCTCCATTCTGGCAACTGATTTAGAAACTGGGTCACCAATCGCTCGTCTTGAAAATGCTCACGAGGATGCCATCTTTAGTTTG ATAAACCTCACAGAGTCAACCATTGCAACTGGGGATGATCAAGGATGTATTAAGGTATGGGATACCAGGCAACGCTCTTGCTGCAATTCTTTTAATGTGC ATGAAGACTATGTTTCAGATATGACCTTTGCATCTGATTCCATGAAACTGTTGTCAACAAGTGGAGATGGGACCCTTTCTGTTTGCAACCTTCGCAGTAA TAAAATCCAATCTCAATCTGAATTTTCTGAAGAAGAGCTATTGTCTGTTGTTATTATGAAGAATGGTTGGAAAGTTATATGTGGTTCACAAAATGGAACA CTGCTATTGTATTCATGGGGCTTTTTCAAGGATTGCAGTGATCGCTTTACTGGTCTTTCCCCAAACTCCATTGATGCTTTGTTGAAGCTTGATGAAGACA GGGTCATTACTGGATCTGAGAATGGACTTATAAGTCTGCTAGGCATATTACCTAATAGAATCATCCAGCCGCTTGCTGAACATTCAGAGTATCCTATTGA GCATCTTGCCTTTTCTCATGACAGAAAGTTTCTTGGCAGTATATCACATGATCAAGTGTTGAAGATGTGGGATTTGGATGATCTATTGCAAAATTCTGTA AATGCTCAAAATGATCAAGCTGCTGTATCAGACAGCGATAGTGATGAGATGGATGTGGATACTAAACCTCCAAAGTCTAGAAAAGGAGCCAAGAGAAAAA ATGAGAATGCTAATGGCGCTGCAAGTAGTTTTTTTGCAGATCTATAA
AA sequence Show only first row Show all	>Potri.004G095000.8 pacid=42795303 polypeptide=Potri.004G095000.8.p locus=Potri.004G095000 ID=Potri.004G095000.8.v4.1 annot-version=v4.1 MEIDLGKVPFTMDFHPSDNLVTAGLITGDLHLYRFNADSSPQRLLEIHAHSEACRAARFINDGQAIITGSSDRSILATDLETGSPIARLENAHEDAIFSL INLTESTIATGDDQGCIKVWDTRQRSCCNSFNVHEDYVSDMTFASDSMKLLSTSGDGTLSVCNLRSNKIQSQSEFSEEELLSVVIMKNGWKVICGSQNGT LLLYSWGFFKDCSDRFTGLSPNSIDALLKLDEDRVITGSENGLISLLGILPNRIIQPLAEHSEYPIEHLAFSHDRKFLGSISHDQVLKMWDLDDLLQNSV NAQNDQAAVSDSDSDEMDVDTKPPKSRKGAKRKNENANGAASSFFADL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Potri.004G095000 [exp]	0	1
					Potri.009G065201 [exp]	2.82	0.7984
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Potri.007G001500 [exp]	3.46	0.7802
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Potri.001G177700 [exp]	8.88	0.8029
AT1G19880			Regulator of chromosome conden...		Potri.002G025600 [exp]	9.16	0.7541
AT3G47630			unknown protein		Potri.001G076200 [exp]	23.15	0.7605
AT3G10440			Shugoshin C terminus (.1)		Potri.008G032600 [exp]	34.20	0.7356
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Potri.013G094800 [exp]	38.47	0.7585
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Potri.018G009100 [exp]	39.57	0.7487	SRZ.4
AT3G59890			Dihydrodipicolinate reductase,...		Potri.017G001900 [exp]	41.42	0.7005
AT4G03180			unknown protein		Potri.014G134700 [exp]	49.29	0.7083

Compare expression of checked genes

Potri.004G095000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.