Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66810 212 / 9e-67 C3HZnF AtC3H14 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G68200 188 / 1e-57 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G35430 57 / 2e-09 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G32360 54 / 7e-08 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT3G19360 47 / 2e-05 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT2G32930 43 / 0.0002 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT2G28450 43 / 0.0003 C3HZnF zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G119900 [exp] 482 / 2e-172 AT1G66810 221 / 3e-70 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.010G118700 [exp] 195 / 2e-60 AT1G68200 243 / 1e-79 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.003G093600 [exp] 59 / 1e-09 AT1G32360 353 / 2e-120 Zinc finger (CCCH-type) family protein (.1) Potri.001G140800 [exp] 59 / 1e-09 AT1G32360 355 / 3e-121 Zinc finger (CCCH-type) family protein (.1) Potri.004G169500 [exp] 55 / 3e-08 AT3G19360 284 / 1e-93 Zinc finger (CCCH-type) family protein (.1) Potri.009G130600 [exp] 53 / 9e-08 AT3G19360 276 / 9e-91 Zinc finger (CCCH-type) family protein (.1) Potri.003G061600 [exp] 52 / 2e-07 AT3G19360 109 / 1e-27 Zinc finger (CCCH-type) family protein (.1) Potri.005G176900 [exp] 42 / 0.0005 AT1G66810 48 / 4e-06 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035256 [exp] 167 / 3e-49 AT1G68200 248 / 6e-81 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10034624 [exp] 164 / 5e-48 AT1G68200 251 / 5e-82 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10004573 [exp] 53 / 1e-07 AT1G32360 342 / 1e-116 Zinc finger (CCCH-type) family protein (.1) Lus10000486 [exp] 53 / 1e-07 AT1G32360 337 / 6e-115 Zinc finger (CCCH-type) family protein (.1) Lus10019431 [exp] 51 / 4e-07 AT3G19360 266 / 2e-87 Zinc finger (CCCH-type) family protein (.1) Lus10043287 [exp] 48 / 7e-06 AT3G19360 290 / 7e-96 Zinc finger (CCCH-type) family protein (.1) Lus10016272 [exp] 42 / 0.0003 AT3G12130 229 / 5e-75 KH domain-containing protein / zinc finger (CCCH type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.004G095100.1 pacid=42796155 polypeptide=Potri.004G095100.1.p locus=Potri.004G095100 ID=Potri.004G095100.1.v4.1 annot-version=v4.1 ATGGAGAAAACAGAATCACCACCGTCTGATTCAAAAACAGCTGCACAATCACCACCGTTTGATTGCCATCAAGCAAACGATCACGATCAATTCGCTTCCA ATTTCACCTCTCTCTACCACTCGATTTTCCCGCCAAAACCTTCACAGCTCCCGAACTCGCTCTCTTTCACCCCCTCCACCACCGCCTCGCCTTCCTCCTC CTCCGCTGCAGATGAAATCTCCACGGAGAACCGCCTCCGCCAAGCTCGACTGATTCTCGAGTACCAGGACCTCTGTGATCACTACAATCTGTCTCTCGCG CGCCTCCAAACCCTAACTAATGAACTCGAGTTGATTCGTCGAGAAAATGCAGATCTCAGAGTCACAAATAGTGAGCTTGTCAAGCTTATCAGTCTCTCTT CTGAAGCAGCCGTGATGCAGCATCAGAACCGTACTTTTGGAAACAATCGTGATGTTGCATTTGAGAGAAGGAATAATGCTAATAACGTGGAGAGAGAAAG AGTGACGTTGCCGAAGAGTATTTCCGTCAGATCTAGTGGTTTTGTGAAGGTGAATCAAGCGGTTTCTGGTAATGTGAGTAACAATGGAGGCGGTCGCGGT AGTGCTAGCAGTAACTCAACTTGGTCTCGTGTGGCGAGTCAACACGATCAACTCGTTTCTGGATCGATTGTGCAGATGCAGCAGAGGGTGTACGTGCCAG GAGGAGGGAAAAAGAGATCGGAGGAGGAAATAGCCGCTGGAATGGAGTTGGAGGTGTTTAATCAAGGGATGTGGAAGACAGAGCTATGCAACAAGTGGCA AGAGACAGGCACCTGTCCTTATGGTAACCATTGTCAGTTTGCTCATGGCATTGGCGAGCTACGTCCAGTTATCAGGCACCCAAGGTACAAGACTCAAGCT TGCCGCATGGTTCTTGCTGGCGGGGTTTGCCCTTATGGCCACAGATGCCACTTTCGCCACTCCCTCACTGACCAAGAGAGGTTACTGCTGGGTCCTCGTT GA
AA sequence Show only first row Show all	>Potri.004G095100.1 pacid=42796155 polypeptide=Potri.004G095100.1.p locus=Potri.004G095100 ID=Potri.004G095100.1.v4.1 annot-version=v4.1 MEKTESPPSDSKTAAQSPPFDCHQANDHDQFASNFTSLYHSIFPPKPSQLPNSLSFTPSTTASPSSSSAADEISTENRLRQARLILEYQDLCDHYNLSLA RLQTLTNELELIRRENADLRVTNSELVKLISLSSEAAVMQHQNRTFGNNRDVAFERRNNANNVERERVTLPKSISVRSSGFVKVNQAVSGNVSNNGGGRG SASSNSTWSRVASQHDQLVSGSIVQMQQRVYVPGGGKKRSEEEIAAGMELEVFNQGMWKTELCNKWQETGTCPYGNHCQFAHGIGELRPVIRHPRYKTQA CRMVLAGGVCPYGHRCHFRHSLTDQERLLLGPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G095100 [exp]	0	1
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Potri.016G104400 [exp]	1.00	0.9654
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.017G119900 [exp]	1.41	0.9562
AT2G45040			Matrixin family protein (.1)		Potri.014G058200 [exp]	3.46	0.9396
AT1G67510			Leucine-rich repeat protein ki...		Potri.010G058200 [exp]	7.00	0.9250
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.007G047500 [exp]	7.14	0.9424
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.003G077200 [exp]	8.12	0.9050
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.002G146500 [exp]	10.00	0.9128
AT2G28250		NCRK	Protein kinase superfamily pro...		Potri.009G010400 [exp]	10.72	0.9103
AT1G33800			Protein of unknown function (D...		Potri.013G102200 [exp]	10.95	0.9168
AT5G14550			Core-2/I-branching beta-1,6-N-...		Potri.001G348400 [exp]	11.22	0.9235

Compare expression of checked genes

Potri.004G095100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.