Plant FIBer expression Database

LPP3.2 (Potri.004G095400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol LPP3.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02600 465 / 1e-164 ATLPP3, LPP3 lipid phosphate phosphatase 3 (.1.2.3.4.5)
AT2G01180 390 / 1e-135 ATLPP1, ATPAP1 LIPID PHOSPHATE PHOSPHATASE 1, phosphatidic acid phosphatase 1 (.1.2)
AT1G15080 383 / 2e-133 ATLPP2, LPP2, ATPAP2 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
AT3G18220 301 / 4e-101 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G119500
[exp]
565 / 0 AT3G02600 460 / 1e-163 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Potri.010G119400
[exp]
457 / 8e-162 AT3G02600 407 / 9e-143 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Potri.008G124900
[exp]
422 / 4e-148 AT3G02600 420 / 3e-148 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Potri.010G119300
[exp]
393 / 4e-137 AT1G15080 452 / 1e-161 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009155
[exp]
478 / 2e-168 AT3G02600 488 / 1e-172 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10028489
[exp]
432 / 3e-152 AT3G02600 465 / 1e-166 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10007933
[exp]
423 / 9e-142 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Lus10035262
[exp]
397 / 6e-138 AT3G02600 429 / 3e-151 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10034630
[exp]
381 / 8e-132 AT3G02600 418 / 4e-147 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10034629
[exp]
367 / 6e-127 AT1G15080 442 / 4e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
Lus10035261
[exp]
366 / 2e-126 AT1G15080 443 / 2e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
Lus10013470
[exp]
332 / 4e-114 AT3G02600 326 / 1e-112 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10013469
[exp]
79 / 8e-16 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0525 pap2 PF01569 PAP2 PAP2 superfamily
Representative CDS sequence
>Potri.004G095400.6 pacid=42794099 polypeptide=Potri.004G095400.6.p locus=Potri.004G095400 ID=Potri.004G095400.6.v4.1 annot-version=v4.1
ATGACTACAATGCCTCTGTGGGATTATGGATCTCTTTCTTGCTTTAAGAATTTTAAAAGCATCTTTCAGGATGCGACAGTCAACAGGCTGGAGATTAATG
CAAATACTTGTCAGTCATTTTCACCAATTGACCTTCCACTATTAGAGAACACGAGCGAAGAGTGCAAGGTGAAGGAGGTCCAGATGAGGGAGGTCCGACT
TGGTTCTGGTACACATACTGTGAGGTCCCATGGAGCTACAGTTGCAAAGACACACATGCATGATTGGCTCATGGTTGTGCTTCTTGTCGTGATAGAGGTC
ATCCTCTATCTTACACCTCCATTTTACCGATATGTTGGGAAGGATATGATGACAGATCTTAGATATCCTTTGTTAGATAATACAGTGCCTGCTTGGGCTG
TCCCGATGTATGCTGTTCTTTTGCCTGTGGTGATATTCCTTGTCGTCTACTATCGTAGGAGAGACGTCTATGATCTTCATCACGCCATACTTGGCCTCTT
ATTCTCCATTCTAGTGACAGCTGTCATTACAGATTCAATAAAAAATGCAGTTGGTCGGCCTCGACCTGATTTCTTTTGGCGTTGTTTTCCTGATGGAAAG
GATGTTTATGATCACTTGGGAAATGTGATATGTCATGGTGAGAAAAGTATCATAAAGGAAGGGCATAAGAGTTTTCCCAGCGGGCACACTTCCTGTTCCT
TCGCTGGTCTGGGTTTCCTATCACTCTACTTATCTGGAAAACTAAAAGCATTTGACTGTAAGGGCCATGTTGCAAAACTATGCATTGTCTTCTTACCAAT
ACTAGCTGCATGTCTTGTTGCCATTTCCCGAGTGGACGACTACTGGCATCATTGGCAGGATGTCTTTGCAGGAGGTCTCTTAGGACTTGTGGTCGCTACA
TTTTGCTATTTGCAATTCTTCCCCCCACCATATCATCCTCAAGGTTGGGGACCTTATGCTTACTTTCAGGAACGTGAGTCACGTGCCAGTGCACAAGCAG
ATGCTACTGTAAATCCACTCAATGCATGGCCAATGGATTCGCATGTTGAGAACCAGGGAGATGATAAAAATGGATTCTTAGGGCTAAATCTTGCAGGTGA
CTTGACTACGACTGTTGAAGATGTGGAATCAGGGAGGAGGTAA
AA sequence
>Potri.004G095400.6 pacid=42794099 polypeptide=Potri.004G095400.6.p locus=Potri.004G095400 ID=Potri.004G095400.6.v4.1 annot-version=v4.1
MTTMPLWDYGSLSCFKNFKSIFQDATVNRLEINANTCQSFSPIDLPLLENTSEECKVKEVQMREVRLGSGTHTVRSHGATVAKTHMHDWLMVVLLVVIEV
ILYLTPPFYRYVGKDMMTDLRYPLLDNTVPAWAVPMYAVLLPVVIFLVVYYRRRDVYDLHHAILGLLFSILVTAVITDSIKNAVGRPRPDFFWRCFPDGK
DVYDHLGNVICHGEKSIIKEGHKSFPSGHTSCSFAGLGFLSLYLSGKLKAFDCKGHVAKLCIVFLPILAACLVAISRVDDYWHHWQDVFAGGLLGLVVAT
FCYLQFFPPPYHPQGWGPYAYFQERESRASAQADATVNPLNAWPMDSHVENQGDDKNGFLGLNLAGDLTTTVEDVESGRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G02600 ATLPP3, LPP3 lipid phosphate phosphatase 3 ... Potri.004G095400
[exp]
0 1 LPP3.2
AT5G53970 TAT7 tyrosine aminotransferase 7, T... Potri.017G014000
[exp]
7.28 0.8134
AT1G64890 Major facilitator superfamily ... Potri.013G076300
[exp]
8.83 0.7353
AT5G17760 P-loop containing nucleoside t... Potri.005G119900
[exp]
9.53 0.7920
AT4G29890 choline monooxygenase, putativ... Potri.006G072800
[exp]
9.79 0.7933
AT2G22960 alpha/beta-Hydrolases superfam... Potri.001G291450
[exp]
10.39 0.8070
AT4G35020 ROP6, ARAC3, RH... RHO-RELATED PROTEIN FROM PLANT... Potri.004G174900
[exp]
11.40 0.7773 RAC4.3
AT3G61550 RING/U-box superfamily protein... Potri.014G091000
[exp]
12.24 0.7951
AT1G33540 SCPL18 serine carboxypeptidase-like 1... Potri.001G290900
[exp]
14.28 0.8045
AT5G41040 HXXXD-type acyl-transferase fa... Potri.015G100800
[exp]
21.72 0.7840
AT5G27110 Tetratricopeptide repeat (TPR)... Potri.003G210301
[exp]
23.91 0.6487

Potri.004G095400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.