Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16220 140 / 3e-36 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G01190 97 / 7e-21 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT3G18230 91 / 4e-19 Octicosapeptide/Phox/Bem1p family protein (.1) AT4G05150 79 / 2e-15 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G25300 70 / 3e-13 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G09620 70 / 1e-12 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G49920 66 / 1e-11 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G16270 65 / 8e-11 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT1G04700 65 / 8e-11 PB1 domain-containing protein tyrosine kinase (.1) AT5G64430 64 / 1e-10 Octicosapeptide/Phox/Bem1p family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G119100 [exp] 621 / 0 AT5G16220 126 / 2e-31 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 107 / 2e-24 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 99 / 8e-22 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 98 / 3e-21 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 87 / 4e-18 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 83 / 9e-17 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 69 / 4e-12 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.009G080200 [exp] 67 / 9e-12 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.003G176100 [exp] 67 / 2e-11 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033570 [exp] 282 / 6e-89 AT5G16220 194 / 9e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10017612 [exp] 261 / 1e-80 AT5G16220 185 / 1e-52 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007965 [exp] 92 / 1e-19 AT2G01190 184 / 1e-51 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002588 [exp] 91 / 3e-19 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10034643 [exp] 89 / 3e-19 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007952 [exp] 89 / 2e-18 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 86 / 2e-17 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 80 / 9e-16 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10013495 [exp] 78 / 7e-15 AT2G01190 176 / 1e-46 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 72 / 4e-14 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Potri.004G095600.1 pacid=42794752 polypeptide=Potri.004G095600.1.p locus=Potri.004G095600 ID=Potri.004G095600.1.v4.1 annot-version=v4.1 ATGGACCCCCAGCCACTGCCACAACCACAACCTCAACCTCAACCACCAGCTACCACACCAAAACTTCGCCTAATGTGCAGTTACGGTGGCCAAATAATCC CACAACCCCACACCAAATCCCTCTTCTATTCAGGTGGTGACACCCGCCTCATCTCCATCCCCACCGGTACGAGCACCGGCACCGCCACCACAAACACCAC CGCCAACGGTCTCACACTCTCATCCTTAATCACTCACTTATCTACAACTCTGAAAATAACCACGCCAATCACTCTGAAATACCAACTTCCACATCACAAT CTTGATTCTCTCATTTCGCTTTCTACCGATGAAGATGTCCTTATCATGCTTGATGAGCACCAAAACAACCGTACACCTTCACGTATTAGATTATTTGTGT TTCCAACCAAACCCTTTTTGAGTCAGCCCGAGTTGAAGGCGACAACTCAGTTAAATCACCCGAAGACTGAGACTTGGTTTGTTGATGCATTGAAGAATGC AAAGATTGTGCATCTTGAGGGTAATGGTAATAATGGTGGTGGGTTCTGTGGTGCTGAGTCTATGGTTTTGGAAACTTCTTCTTCTTTTGGGTCTTCTTCG TCTTCGGTTTCGTTGTCTAATTTGGGTGTTAAAGGTGGTTTTGTTGAGGATAATGGGACTAGTTTGGTGGATAATAAGGTTAAATTGCCTACCCCAGAAG GAGTTTCTAGTGATCATGGTCTGGGAACTGCGGTTTGTCAGGATTCACAGTTTGTGACGTATCAAGATCCAGTTGGGGCTGTTTCTTCAGTGGAGAGTAA AGCTTCTCTTATAAATCCATTTGAATCAGAGAGTAAAATCCCTGATCCTCCTCCTCCCATGGGGGTTGAGATGCATAAAACAGTTTCTGTTTCTGGGTAT CCAGTGTCTTTACAATATGATCAGCCACAACAACTGCAATTCATTCAAACAGGTGGCCCACATTATATACCCCAGGACTCAAGTGGTATAGCGCCAATGT CTTCTTACTATGTGATGAGTTCTCCAGTGCCTCAGCAGCAGGTTTATTATCAGACCAACCAACCTCAGCCGATATACCTAGTGCCTGTTGCGCAGCCACA CAATTTACCCGGGCAAAGAGGTTTGATGAACACTGCAACTGTTGCTTCTAGCCATCCTCCAGTGCATCATCATGATTCTACCATGCTCCCTGCTCAAGTG GCTTACCCTGTAGCTGATTTAACCTCACAAGTTTATAGAACAATCCCAAGAACAAGTTCGCCTGTTACTGTACCTTGTAATGAAAATAAGCAACAATGTG GAGGACCTCCTCAAATGAATCTCCAATCCCAGCCTTTATGTGCTGCTTCCAAGGAGATTGGTAACTGTAGTAAACAAATTGATAATGATCATGTTCATGC CCAAATATACAAGTCTCAGCCTCCGCCTCCGACACTGCCTTCTCAGTATCAAACCATGACCCCTGCCACAACAATCTTGTTATCAGAGGCTATTGCACGG TTAAATACAGATAGCATTAAGCAGCAACAGCCAAGAATATCAAGCCATGATGAGCATAATCTATAG
AA sequence Show only first row Show all	>Potri.004G095600.1 pacid=42794752 polypeptide=Potri.004G095600.1.p locus=Potri.004G095600 ID=Potri.004G095600.1.v4.1 annot-version=v4.1 MDPQPLPQPQPQPQPPATTPKLRLMCSYGGQIIPQPHTKSLFYSGGDTRLISIPTGTSTGTATTNTTANGLTLSSLITHLSTTLKITTPITLKYQLPHHN LDSLISLSTDEDVLIMLDEHQNNRTPSRIRLFVFPTKPFLSQPELKATTQLNHPKTETWFVDALKNAKIVHLEGNGNNGGGFCGAESMVLETSSSFGSSS SSVSLSNLGVKGGFVEDNGTSLVDNKVKLPTPEGVSSDHGLGTAVCQDSQFVTYQDPVGAVSSVESKASLINPFESESKIPDPPPPMGVEMHKTVSVSGY PVSLQYDQPQQLQFIQTGGPHYIPQDSSGIAPMSSYYVMSSPVPQQQVYYQTNQPQPIYLVPVAQPHNLPGQRGLMNTATVASSHPPVHHHDSTMLPAQV AYPVADLTSQVYRTIPRTSSPVTVPCNENKQQCGGPPQMNLQSQPLCAASKEIGNCSKQIDNDHVHAQIYKSQPPPPTLPSQYQTMTPATTILLSEAIAR LNTDSIKQQQPRISSHDEHNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Potri.004G095600 [exp]	0	1
					Potri.019G014314 [exp]	1.00	0.9190
AT4G33540			metallo-beta-lactamase family ...		Potri.008G085751 [exp]	4.58	0.8601
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014356 [exp]	8.00	0.8569
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014336 [exp]	9.79	0.8395
					Potri.019G014354 [exp]	11.40	0.8637
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Potri.001G254800 [exp]	17.34	0.8428
AT5G05140			Transcription elongation facto...		Potri.016G033300 [exp]	17.49	0.7543
AT1G61190			LRR and NB-ARC domains-contain...		Potri.019G014358 [exp]	19.97	0.8177
					Potri.002G182100 [exp]	22.84	0.8374
					Potri.019G014316 [exp]	25.45	0.7800

Compare expression of checked genes

Potri.004G095600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.