Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01210 736 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 692 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 686 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 495 / 2e-166 Leucine-rich repeat protein kinase family protein (.1) AT4G37250 369 / 3e-117 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 360 / 5e-115 Leucine-rich repeat protein kinase family protein (.1) AT3G57830 358 / 4e-114 Leucine-rich repeat protein kinase family protein (.1) AT5G67280 360 / 9e-114 RLK receptor-like kinase (.1) AT4G34220 343 / 2e-107 Leucine-rich repeat protein kinase family protein (.1) AT2G23300 332 / 8e-103 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G119000 [exp] 1212 / 0 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 783 / 0 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 760 / 0 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 513 / 2e-173 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 515 / 4e-173 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G142300 [exp] 377 / 3e-120 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 376 / 8e-120 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G057500 [exp] 368 / 3e-118 AT3G57830 707 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G300700 [exp] 353 / 5e-111 AT4G34220 620 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017611 [exp] 802 / 0 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 798 / 0 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043480 [exp] 656 / 0 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034108 [exp] 644 / 0 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015799 [exp] 473 / 1e-157 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 442 / 4e-146 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010263 [exp] 336 / 3e-104 AT4G37250 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030333 [exp] 331 / 1e-102 AT4G37250 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 325 / 6e-101 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021022 [exp] 323 / 6e-101 AT3G57830 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G095700.1 pacid=42796038 polypeptide=Potri.004G095700.1.p locus=Potri.004G095700 ID=Potri.004G095700.1.v4.1 annot-version=v4.1 ATGGTTCTGCAATTTGTTTCTCTAGTTTTCTTTATTGTCCACTATATTACTTTTGCTGGTTCTGTTAATGATGAAGGTCTTGCTCTTCTATCCTTCAAGC AATCAATAGAAGACTCCACAGCTCGCAGTCTGGACAACTGGAACTCATCAGATGCGAACCCGTGTTCGTGGTATGGAGTTACATGCAGAGAAGAGAAGGT CTTTTTTCTCAGGCTTCCAAACAAAGGACTAGCTGGGATGCTGCAACTTGATACTGGTAAGCTTGTTGCCTTGAGTCATGTTAATCTCAGGAGTAACTAC CTCTCTGGAAGCTTGCCAGTCGAGCTCTTTAATGCAGCAGGGTTAAAATCCTTGATACTCTCAGGAAACTCATTTTCAGGGACAGTTCCTGAAGAGATAA GGAACCTCAAGTACCTACAGACCCTAGATCTTTCTCAAAATTCTTTCAATGGGTCATTACCTTCATATCTTATTCAATGCAAGAGACTGAAAAATCTTGT ACTCAGTCGAAACTTTTTCGCCGGCTTTCTACCAGATGAGTTAGGTAACAATTTGGTTATGCTTCAGACACTGAATCTTTCACATAACAGCTTCAGGGGT TTGATCCCTGGCAGCCTAGGCAACTTGTCAAGCTTGCGAGGAGTGCTTGATCTATCTCACAATCGTTTTGATGGCCCTATTCCAGCAAGCTTAGGAAATC TTCCTGAGTTAGTTTATATCAATCTCACCTACAACAATCTTAGCGGTGCAATACCACAAACTGATGCTCTGGTGAATGTAGGTCCAACTGCTTTTATTGG CAACCCTCTTCTCTGTGGGCCTCCTCTGAAAAATCAATGTCCTTCAAGCACTTCCCATCCAAATATTGATCCTAAGCCCTTAGCAGTAGGAGACAGCTCA GGCAAGCCAGGGAGAGGAAAATGGTGCTGGGTCGTGATCGCATCTGTTGCCAGCACAATGGTAGGAATTTGCCTAGTTGCGTTATCTTTCTGTTACTGGT ACAAGAAGGTTTATGGTTGTAAAGAAAGCATACGTACTCAGGGCCGTAGTTTTGAAGAAAAGTCAATGGTTAGAAAGGAAATGTTCTGCTTCAGAACAGC AGACTTGGAATCTCTATCAGAAACTATGGAACAATACACCTTTGTCCCATTAGACTCAAAGGTCAGTTTTGATCTTGAACAACTTCTGAAAGCATCTGCT TTTCTGGTTGGAAAGAGCGGTATAGGGATTGTCTATAAAGTTGTTCTTGAAAAGGGGCTAACTGTGGCAGTGAGGAGACTGGAAGATGGAGGTTCTCAGA GGTTCAGGGAGTTTCAAACTGCAGTTGAAGCAATAGGCAAAATTAGACATCCAAACATTGTCAGCCTTCTAGCTTATTGCTGGTGCATCAACGAGAAGTT GCTTATCTATGATTACGTGTCCAATGGTGACCTTGCCACTGCAATTCATGGAAGAACAGGAATGACATACTTTAAACCTCTTTCATGGTCCATTCGACTT AGAATCATGAAAGGATTAGCAAAGGGTCTAGCTTTTCTACATGAATGCAGTCCCAAAAGGTATGTCCATGGAAATTTAAAGACTAGCAATATACTGCTCG GGGAGAACATGGAGCCCCACATCTCCGATTTCGGACTCAACTGCTTTGCTTATACAAGTGAAGAATCCATACCAGTTCAAGGGGAACAAATGACAAGCGG AACACCACAACAGGGTTCTCCATATGCTTTGACACCAACACATTCAAGCATGTCGGGGTCTTGTTATGAAGCTCCCGAGTCCTCAAAAGTCATAAAACCA TCACAGAAATGGGATGTTTACTCATTTGGGGTAATTCTATTGGAGATCATTTCTGGGAAGTCACCAATTATGCAGATGAGTCTGTCAGGAATGGATCTAG TCCGATGGATTCAGCTTAGCATTGAAGTGAAGCCACCATCCGAAGTACTAGATCCCTTCTTAGCTCGTGATTCGGACAAGGAACATGAGATGATTGCAGT ACTTAAGATTGCTCTAGCCTGTGTTCATGCGAGCCCTGACAAGAGACCCTCCATGAAGAATGTGAGTGAAAATCTGGAAAGATTGGTCTCATCGACTTAA
AA sequence Show only first row Show all	>Potri.004G095700.1 pacid=42796038 polypeptide=Potri.004G095700.1.p locus=Potri.004G095700 ID=Potri.004G095700.1.v4.1 annot-version=v4.1 MVLQFVSLVFFIVHYITFAGSVNDEGLALLSFKQSIEDSTARSLDNWNSSDANPCSWYGVTCREEKVFFLRLPNKGLAGMLQLDTGKLVALSHVNLRSNY LSGSLPVELFNAAGLKSLILSGNSFSGTVPEEIRNLKYLQTLDLSQNSFNGSLPSYLIQCKRLKNLVLSRNFFAGFLPDELGNNLVMLQTLNLSHNSFRG LIPGSLGNLSSLRGVLDLSHNRFDGPIPASLGNLPELVYINLTYNNLSGAIPQTDALVNVGPTAFIGNPLLCGPPLKNQCPSSTSHPNIDPKPLAVGDSS GKPGRGKWCWVVIASVASTMVGICLVALSFCYWYKKVYGCKESIRTQGRSFEEKSMVRKEMFCFRTADLESLSETMEQYTFVPLDSKVSFDLEQLLKASA FLVGKSGIGIVYKVVLEKGLTVAVRRLEDGGSQRFREFQTAVEAIGKIRHPNIVSLLAYCWCINEKLLIYDYVSNGDLATAIHGRTGMTYFKPLSWSIRL RIMKGLAKGLAFLHECSPKRYVHGNLKTSNILLGENMEPHISDFGLNCFAYTSEESIPVQGEQMTSGTPQQGSPYALTPTHSSMSGSCYEAPESSKVIKP SQKWDVYSFGVILLEIISGKSPIMQMSLSGMDLVRWIQLSIEVKPPSEVLDPFLARDSDKEHEMIAVLKIALACVHASPDKRPSMKNVSENLERLVSST

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01210			Leucine-rich repeat protein ki...		Potri.004G095700 [exp]	0	1
AT1G21695			hydroxyproline-rich glycoprote...		Potri.002G080200 [exp]	3.46	0.9097
AT1G05440			C-8 sterol isomerases (.1)		Potri.008G154400 [exp]	3.74	0.7767
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.014G163000 [exp]	7.21	0.7206
AT3G02885		GASA5	GAST1 protein homolog 5 (.1)		Potri.017G124200 [exp]	7.74	0.8575	Pt-GASA5.2
					Potri.018G145526 [exp]	10.24	0.8348
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076500 [exp]	12.48	0.8336
					Potri.001G073166 [exp]	13.22	0.8336
AT1G57775			Protein of unknown function (D...		Potri.004G110661 [exp]	15.74	0.5888
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Potri.016G135400 [exp]	18.16	0.8046	Pt-LTP1.2
AT2G41810			Protein of unknown function, D...		Potri.006G050400 [exp]	18.24	0.8255

Compare expression of checked genes

Potri.004G095700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.