Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66840 314 / 1e-98 PMI2, WEB2 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) AT5G38150 271 / 7e-83 PMI15 plastid movement impaired 15, Plant protein of unknown function (DUF827) (.1) AT5G55860 125 / 6e-30 Plant protein of unknown function (DUF827) (.1) AT1G12150 57 / 2e-08 Plant protein of unknown function (DUF827) (.1) AT2G26570 57 / 4e-08 WEB1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G118900 [exp] 930 / 0 AT1G66840 305 / 5e-95 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Potri.001G369200 [exp] 144 / 4e-36 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1) Potri.002G126700 [exp] 47 / 3e-05 AT2G26570 694 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.016G133300 [exp] 44 / 0.0003 AT2G38370 258 / 2e-78 Plant protein of unknown function (DUF827) (.1) Potri.014G029800 [exp] 43 / 0.0007 AT2G26570 669 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033572 [exp] 430 / 4e-143 AT1G66840 274 / 2e-83 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Lus10017614 [exp] 416 / 1e-137 AT1G66840 268 / 3e-81 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Lus10022531 [exp] 108 / 3e-24 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10016626 [exp] 105 / 2e-23 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10037354 [exp] 59 / 1e-08 AT2G26570 840 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10035778 [exp] 52 / 2e-06 AT2G26570 843 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10009099 [exp] 47 / 5e-05 AT2G38370 340 / 1e-107 Plant protein of unknown function (DUF827) (.1) Lus10025249 [exp] 47 / 5e-05 AT2G38370 327 / 5e-105 Plant protein of unknown function (DUF827) (.1) Lus10039107 [exp] 44 / 0.0005 AT1G12150 360 / 5e-118 Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [poplar] [flax] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Potri.004G095800.3 pacid=42794770 polypeptide=Potri.004G095800.3.p locus=Potri.004G095800 ID=Potri.004G095800.3.v4.1 annot-version=v4.1 ATGGATAGGAGAGTGTTTGATGACAGGAGGAGAATTGGGACAGTGAAAGCAGCTGTTAATATGTATGGAGAAAGAATTCTTGAAAGTAGTAGCTCTTCAC TGAAGAAACCAGCTCAGATGGATTTGCCTGAGAAGTCTTCCTCAAGAGCTAAGGATCTGCGCTTTGCTGAGAGAGACTTGGTTAGATATAAAGAGAGTAG AAGGGCTGCAGAGTCGGCAAAAGGCAAAGCAGAATCAAGACTCTCAGAGGCGAAAAGAAAAGTGAAAGATCTTGCTTTACAGATTGAGCAATCTAACTTG AAGGTAAAAGCTCAGATGAGAGACATGGACATGCTAAAGAAGTTGATTAAGCACGAAGACAAGGCTTTGGTTGTTGGGAGTGCTGAAAGCCATCAATATG CTGAAGTGATAAGGGAGTTGGAAGGTGTGAAGCAAGAACTGAGTAAACTTGAGATTGAGATGGTTTCTGTTTTGGAAGAGAAAACGCGGATAGAGAAGGA AATAGCAAGCTCAAATTCTAAATTGTCGTCTAATATGAACCATGTGGAAGCAATCAGGAAGAAAATTGACGAGGCAAATGAAGAGCAAATGCCAGTTGAG TTGACACGGATTGAGGCCTTGAAAGAGTTTGGAGAAATTCAAGCTCAAAGAGAGAAGGAAGCAAGTGAATTCTCGTCTGCAATGGTGGAAAGTAAGAAGA AAATGAAGAATGCCAAAGAGGAAGACAGCAGCTCGAAAGATCTTGAGTCTAAATTGGCTGTTACATTATATGATGCCAATTTGTTACAAAATGAACTAAA GCTTGCTAAAAATATGGACATAAAGGGAAGAAATGACGGTATGAAGCATCTGGGAGACAGTTTCCGGAAAGGCAAGCAATTGGAGGATTCCCCTGCATTG AAGTCCATAACAGAAGAATTGCACGCAGCTAAGAAAGAATTGGCTTCGATTAGGGAAGAGGGTTTTCAGTTCATGACCTCACTGGATATCATAAGGAATG AGCTGAGGCATGTAACAGAAGAAACAGCTCGATTGGAGAAAGAGAAGGAGAAGGCTGATATAACTGCTCAAAATCTGAACTCAAAGCTGCTGAGAGCAAA ATCTAAATTGGAAACTGCATGTGCAGTTGAGGAGAAGGCAAAATCAATTTTATTCAGTCTGTCTGTGACACTTGAACAGTTGAAGACCGAAACGGAGTTA GCAAGGAAAGAGAAGAAGCTCATCAGTGAAGAAACTGCAAACATTAAGTCAGAAATCCACAAAACTGAATCTCAAATGGACTTGACTGAGGGAAAATTGC AGGCGGCAATTCGGGAGCTTCAAGCAGTCAAAACATCAGAGTCTTTAGCTCTTGAGAATCTGCGAAACGGTATTGAAAATACCATGAGATCTAGAGCTTC TGCTTCTCAACATAGTTCATCGATTACCATCTTAAAGTTTGAATATGAGTATTTAACTGGACATACAGCCAAGGCTGAAGAAATTGCAGACAAAAAGGTT GCAGGAGCTCATGCATGGATTGAAGCACTGAAAGCCAGCGAAAAGGAGATATTGATGAAAATTGAACTAGCTCATAGAGATATCAGAGAGACAAGGGTAG AGGAGGAGCAAGAGATATATAGAACTGAGAGTTCACTAACTGCTAAAAGAATGGTAGAGGGAGAGCTAAGAAAGTGGAGACAAACGAGCAAAAAAAACAC AGAAGCTGAGAAGCAGCAACAGCCATTGCCAAGGAAATCCATGGAAGCTAATGGTAATCAGACTCCATCAAGACGTTCCAAGCTCCGAAATTCTGGTTCT CCAGCAGTTCGAATGACTCCTCGATCAACTTCAATCACTATCAAGAAGAAAGGAACAGTGGAGCCAAATTTAGCCAAGTTTTTCATTGGAAAGAGTTGA
AA sequence Show only first row Show all	>Potri.004G095800.3 pacid=42794770 polypeptide=Potri.004G095800.3.p locus=Potri.004G095800 ID=Potri.004G095800.3.v4.1 annot-version=v4.1 MDRRVFDDRRRIGTVKAAVNMYGERILESSSSSLKKPAQMDLPEKSSSRAKDLRFAERDLVRYKESRRAAESAKGKAESRLSEAKRKVKDLALQIEQSNL KVKAQMRDMDMLKKLIKHEDKALVVGSAESHQYAEVIRELEGVKQELSKLEIEMVSVLEEKTRIEKEIASSNSKLSSNMNHVEAIRKKIDEANEEQMPVE LTRIEALKEFGEIQAQREKEASEFSSAMVESKKKMKNAKEEDSSSKDLESKLAVTLYDANLLQNELKLAKNMDIKGRNDGMKHLGDSFRKGKQLEDSPAL KSITEELHAAKKELASIREEGFQFMTSLDIIRNELRHVTEETARLEKEKEKADITAQNLNSKLLRAKSKLETACAVEEKAKSILFSLSVTLEQLKTETEL ARKEKKLISEETANIKSEIHKTESQMDLTEGKLQAAIRELQAVKTSESLALENLRNGIENTMRSRASASQHSSSITILKFEYEYLTGHTAKAEEIADKKV AGAHAWIEALKASEKEILMKIELAHRDIRETRVEEEQEIYRTESSLTAKRMVEGELRKWRQTSKKNTEAEKQQQPLPRKSMEANGNQTPSRRSKLRNSGS PAVRMTPRSTSITIKKKGTVEPNLAKFFIGKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.004G095800 [exp]	0	1
AT1G06690			NAD(P)-linked oxidoreductase s...		Potri.005G207100 [exp]	1.00	0.9667
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Potri.006G051100 [exp]	2.82	0.9653	Pt-GUN5.1
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Potri.013G124900 [exp]	4.89	0.9546
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Potri.004G230800 [exp]	6.48	0.9490
AT2G44930			Plant protein of unknown funct...		Potri.012G012202 [exp]	6.70	0.9392
AT2G44930			Plant protein of unknown funct...		Potri.012G012000 [exp]	8.06	0.9408
AT1G25440	CO	COL16	B-box type zinc finger protein...		Potri.015G054600 [exp]	9.38	0.9422
AT4G12800		PSAL	photosystem I subunit l (.1)		Potri.002G239700 [exp]	11.09	0.9547	Pt-PSAL.3
AT2G44930			Plant protein of unknown funct...		Potri.012G012500 [exp]	11.22	0.9361
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Potri.005G178300 [exp]	11.83	0.9303

Compare expression of checked genes

Potri.004G095800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.