Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16210 1578 / 0 HEAT repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118500 [exp] 44 / 0.001 AT3G25800 1115 / 0.0 protein phosphatase 2A subunit A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009154 [exp] 1650 / 0 AT5G16210 1538 / 0.0 HEAT repeat-containing protein (.1) Lus10028491 [exp] 1611 / 0 AT5G16210 1484 / 0.0 HEAT repeat-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G095900.1 pacid=42795345 polypeptide=Potri.004G095900.1.p locus=Potri.004G095900 ID=Potri.004G095900.1.v4.1 annot-version=v4.1 ATGGAAGTGGAGAGATCGTCGCTGTGCAATTGTGTGGTGAATTTCTTGTTAGAAGAGAAATACATATTAACAGCATTTGAATTGTTACAAGAATTACTAG ATGATGGAAGAGACGATCACGCTATTCGTCTCAAAGAATTCTTCTCTGACCCTTCTCACTTCCCTCCTGATCAGATCTCTCGCTTCAACTCTCTTCGAGT TGCAGATCCTCAGAGTTTGTTAGAAGAGAAAGAAGCTATGGAAGAAAAATTAGCACTTACTGCTTACGAGCTTCGTTTAGCACAAGAGGATATTTCTAAG TTGAAGACTGAATTACAGAAGAAATCAGATTTGTCACTGGCTGAATTGAGTGAGTCGAAGTCAAATTTTTCTGTTAATCCGGGACCAGACGTTGTGCGAC AAAAGAAGAATGCTTCCCTCTCTGACTTGGGCCCTTTGAAAGATAATGAGCGTAGAGATCTTAACTGTGCTGTAAAGGAATATTTACTTTTAGCAGGGTA CCGGCTTGCTGCTATGACATTTTATGAAGAAGTTACAGATCAGAATTTAGATGTTTGGCAGAATACACCTGCATGTGTCCCAGATGCCTTGCGCCATTAT TATTATCAATACCTTTCGTCCACTTCAGAGGCTGCCGAGGAGAAAATTGCTATGCTTCGAGAAAATGAGTCATTACTAAAAACAAATGAAAGGCTGAATA ACGAAAAGGAGAAGTTGCTGATAGCTAAAGATTTGTCCGATAATCAAATTAGTGGATTAACTAAATCCTTAGAAGCCATGCAAAAGGATCTCAAGGACAG GGAGAGCCAAATACAAGAGTTGAAGCAATCATGGGAGCGCCAAAGAAAGGAAATCAATGATTGCAGATCTGAAATCACTTCATTAAAAATGCACATTGAA GGATCCCGTTCTGGAATGAACGTGTTAGCTAGTGATGTCGATGCTGTTCAATCGCAGTCCTTGGAAAAGTACAAGGAAGAAATAAAGTCATTGCAGATGG AAATAGCAGGATTGAAGGCAAAGGGAGCATATGCTTCCGAATCCATAGATAACTCCACTTCTGAGAAAGAGACTTGTCAGGCTGAAGAGAAAGTGGTTGA AATAGATGAAGATAAAACTATAGTCTCCCAACCAGTTGATGTGGCAGGAGTTTTGGGCAATGGAGATGTTCTACCACTGTCTATCAATGAAACCAATAAA CCTGAGGAAGTTTTGGAAGATTTATTGAACAGTTGTTCAGATGAAAATGCCCTTGTTGATAACAGTGTATTAGTCACCAAACAAAATGGTGAAGCACCAT CAGAAGATGGTAGGTTACAACTAGAATCGGACAACTTGGGTGATAAAGCTGCTTCTGAGAATATGGGCTTGCGAACCATTGAGATCCTTGCTGATGCTTT GCCCAAGATTGTTCCTTATGTTTTGATCAATCACCGAGAGGAGCTTCTTCCCCTAATGATGTGTGCAATTGAGTGTCATCCAGATAGTGGCACACGAGAC TCCTTGACCCACACACTGTTTAATTTGATAAAACGTCCGGATGAGCAGCAGAGACGAATAATAATGGATGCATGCGTTAGTCTTGCTAAGAATGTAGGGG AGATGAGAACAGAAACGGAATTGCTTCCCCAGTGTTGGGAACAAATAAACCATATGTATGAGGAGCGTAGGTTGCTTGTGGCTCAATCTTGTGGAGAGCT TGCAGAATTCGTCCGCCCTGAGATTCGTGATTCTCTAATTTTGTCCATTGTGCAACAGCTGATAGAAGATTCTGCAACTGTTGTACGAGAAGCTGCTGCT CATAATTTGGCTTTGCTACTTCCACTATTCCCAAATGTGGACAAATATTTCAAGGTAGAGGAGTTGATGTTCCAATTGGTATGTGATCCCTCTGGAGTGG TGGTGGATACTGCATTGAAAGAACTGCTTCCTGCAGTTATAAAGTGGGGAAACAGACTAGAACACATTTTAAGAGTTCTGCTCTCCCACATCTTGAGCTC TGCTCAGCATTGTCCTCCTCTCTCCGGGGTTGAAGGCTCTATGGAATCACATCTACATGTTTTAGGGGAACGTGAGCGCTGGAATATTGATGTTTTATTA AGAATGCTGGTGGAATTGCTTTCCTCTGTGCACCAGAAAGCAGTTGAGACTTGCCCTTTATCTTCAGCCCCAGAGTCAAAGGACATGATGTTCTCTACCT CCTTGCTTGAAACGTATGCAAGGGAACATGCTGAATGGCCAGCATTTGATTGGATGCATGTCGATTGCTTTCCTGATCTGATACAGCTCACCTGCATGTT ACCTCAGAAAGAAGATAGTTTAAGAATTAGAACTACAAAGTTTTTGCTGGCTGTAAGTGAATACTTTGGGGATTCTTATCTGGTACACATAATGCTGCCC ATATTCATGGTATCGGTTGGAGATAATGCTGATTTGTCATTTTTCCCTTCTGTCAACCATCCAAGAATAAAAGGTTTGAGGCCAAGAACTGCTGTTGCTG AGAGACTTGCTACTATGTGCGTATTGCCACTGCTTTTGGCTGGTGTTTTAGGTGCCCCCAGCCAGCATGAACAGTTAGCAAACTACTTGAGAGGGCTGCT AGTTGATGGCACCCTGAAAGAGAGTCAGTCAACAAAGCACACTGCTGAGATTATTGATGCTGTTCGGTTTCTTTGCACATTTGAGAAGCACCACAGTATC ATTTTCAATATTTTATGGGAAATGGTTGTCAGCTCCAACATAGATATGAAAATCAATGCTGCCAACCTTTTGAAAGCCATTATGCCATATATTGATGCGA AAGTTGCTTCCACTCACGTTTTGCCCGCGCTGATCACTCTTGGCTCTGACCCAAACCTGAATGTTAAGTATGCCAGCATAGAAGCATTTGGAGCTGTTGC ACAGCATTTCAAAAATGACATGATTGTTGACAAGATACGCGTCCAAATGGATGCGTTTCTTGAAGATGGATCCCATGAAGCTACTATTGCTGTGGTCCGT GCTTTATTGGTGGCAGTACCACATACAACAGACAAACTTAGAGATTATCTCCTTTCCAAGATATTTCAGTTTACAGCCTTGCCAGCTTCTGTAAGTGATG TGATGCGTCGCCGTGAGAGAGCTAATGCATTCTGTGAATCAATCCGTGCCCTGGATGCTACAGATCTTTCTGCAAATAGTGTAAGGGAATTTCTCCTTCC TGCAATACAAAACCTGTTAAAAGACCCGGATGCATTAGATCCAGCTCACAAAGAAGCCCTAGAGATAATAATGAAGGAAAGATCTGGTGGAGCTTTAGAT GCTCTTAGTAAAGCGATGGGTGCTCATCTTGGGCTAGCCTCATCAGTCAGTAGTTTCTTTGGAGACAGTGGGCTGTTAGGGAAGAAAGAAGCTTCGGAGC CTGTATCACCACAGCCTGACTCTCCGAAGGCTGTGCCACCCCTTCAAGCGGAAGACACAAGATTCAGGCGTATCATGAGAGGTAATTTCTCGGAAATGCT TAGAGGTAAAACAAAGGGCCTAGATGAAACAAACCCTAGCCAATAA
AA sequence Show only first row Show all	>Potri.004G095900.1 pacid=42795345 polypeptide=Potri.004G095900.1.p locus=Potri.004G095900 ID=Potri.004G095900.1.v4.1 annot-version=v4.1 MEVERSSLCNCVVNFLLEEKYILTAFELLQELLDDGRDDHAIRLKEFFSDPSHFPPDQISRFNSLRVADPQSLLEEKEAMEEKLALTAYELRLAQEDISK LKTELQKKSDLSLAELSESKSNFSVNPGPDVVRQKKNASLSDLGPLKDNERRDLNCAVKEYLLLAGYRLAAMTFYEEVTDQNLDVWQNTPACVPDALRHY YYQYLSSTSEAAEEKIAMLRENESLLKTNERLNNEKEKLLIAKDLSDNQISGLTKSLEAMQKDLKDRESQIQELKQSWERQRKEINDCRSEITSLKMHIE GSRSGMNVLASDVDAVQSQSLEKYKEEIKSLQMEIAGLKAKGAYASESIDNSTSEKETCQAEEKVVEIDEDKTIVSQPVDVAGVLGNGDVLPLSINETNK PEEVLEDLLNSCSDENALVDNSVLVTKQNGEAPSEDGRLQLESDNLGDKAASENMGLRTIEILADALPKIVPYVLINHREELLPLMMCAIECHPDSGTRD SLTHTLFNLIKRPDEQQRRIIMDACVSLAKNVGEMRTETELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLIEDSATVVREAAA HNLALLLPLFPNVDKYFKVEELMFQLVCDPSGVVVDTALKELLPAVIKWGNRLEHILRVLLSHILSSAQHCPPLSGVEGSMESHLHVLGERERWNIDVLL RMLVELLSSVHQKAVETCPLSSAPESKDMMFSTSLLETYAREHAEWPAFDWMHVDCFPDLIQLTCMLPQKEDSLRIRTTKFLLAVSEYFGDSYLVHIMLP IFMVSVGDNADLSFFPSVNHPRIKGLRPRTAVAERLATMCVLPLLLAGVLGAPSQHEQLANYLRGLLVDGTLKESQSTKHTAEIIDAVRFLCTFEKHHSI IFNILWEMVVSSNIDMKINAANLLKAIMPYIDAKVASTHVLPALITLGSDPNLNVKYASIEAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATIAVVR ALLVAVPHTTDKLRDYLLSKIFQFTALPASVSDVMRRRERANAFCESIRALDATDLSANSVREFLLPAIQNLLKDPDALDPAHKEALEIIMKERSGGALD ALSKAMGAHLGLASSVSSFFGDSGLLGKKEASEPVSPQPDSPKAVPPLQAEDTRFRRIMRGNFSEMLRGKTKGLDETNPSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16210			HEAT repeat-containing protein...		Potri.004G095900 [exp]	0	1
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.011G024000 [exp]	4.79	0.8797	Pt-SPIKE1.3
AT4G19180			GDA1/CD39 nucleoside phosphata...		Potri.004G236900 [exp]	5.29	0.8735
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Potri.002G254300 [exp]	5.47	0.8687	XIB.1
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Potri.007G118300 [exp]	5.65	0.8288
AT1G31730			Adaptin family protein (.1)		Potri.004G235200 [exp]	7.74	0.8100
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.010G227100 [exp]	10.09	0.8435
AT1G21170		SEC5B	Exocyst complex component SEC5...		Potri.002G068900 [exp]	13.63	0.8763	Pt-SEC5.2
AT4G20300			Protein of unknown function (D...		Potri.003G157500 [exp]	13.92	0.7995
AT3G11130			Clathrin, heavy chain (.1)		Potri.010G186900 [exp]	14.73	0.8606
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Potri.016G023000 [exp]	15.00	0.8712

Compare expression of checked genes

Potri.004G095900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.