Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39050 134 / 6e-37 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29635 130 / 1e-35 HXXXD-type acyl-transferase family protein (.1) AT3G29590 129 / 3e-35 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT3G29680 127 / 1e-34 HXXXD-type acyl-transferase family protein (.1) AT3G29670 124 / 2e-33 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G39080 121 / 2e-32 HXXXD-type acyl-transferase family protein (.1) AT5G61160 115 / 4e-30 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT5G39090 112 / 4e-29 HXXXD-type acyl-transferase family protein (.1) AT3G29690 95 / 2e-24 HXXXD-type acyl-transferase family protein (.1) AT1G03495 95 / 1e-22 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G096066 [exp] 414 / 6e-146 AT5G39050 273 / 2e-86 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G096425 [exp] 352 / 2e-125 AT5G39050 143 / 2e-40 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G096300 [exp] 354 / 2e-122 AT3G29670 311 / 1e-101 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) Potri.004G096132 [exp] 354 / 3e-122 AT3G29670 308 / 2e-100 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) Potri.004G093800 [exp] 237 / 1e-76 AT5G39080 302 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 191 / 9e-59 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103200 [exp] 191 / 1e-58 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.001G455150 [exp] 182 / 8e-58 AT5G39050 191 / 7e-58 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 188 / 1e-57 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033599 [exp] 154 / 1e-44 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 147 / 7e-42 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10041656 [exp] 142 / 1e-40 AT3G29590 242 / 6e-76 HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 139 / 5e-39 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10041657 [exp] 133 / 2e-38 AT3G29590 143 / 3e-40 HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 135 / 2e-37 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 130 / 2e-35 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10035802 [exp] 130 / 4e-35 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10036582 [exp] 129 / 2e-34 AT3G01090 834 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10020514 [exp] 127 / 3e-34 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.004G096200.2 pacid=42794294 polypeptide=Potri.004G096200.2.p locus=Potri.004G096200 ID=Potri.004G096200.2.v4.1 annot-version=v4.1 ATGATAAACTCTCAACTTGATAAGCTTGGATCTAAAGAGGAAGCAAATCAAACAAAGCCAATATATTTGTCGACTTACGTGCTTGTATATGCATATACAA TGGTTTGCATGCTTGAAGCAAAAGGCGTAAATAGCAATGATAAGATTAAGATTGTGATTCCGGTAGACTGTAGAGCCCGTTTAAACCCTCCATTACCTAA GAATTATATTGGTAATTGTGTTAGCTCCTTTGATGTGGTTGTGGAAAGAGAAGATCTCATGAAAGAGAATGGTGTTGCGTATGTTGCGAAGAGGCTTACT GAGATGATAAAAGGATTAGAGAATAGATCAGTTATCGAGGGAGCAAAGGAGAGGATACCATACACTGATTGGGAGAAATTTACTCAAACGGTTCGAGCTG TTGGGACAAACCGATTTGGGATGTATGGGGCAGATTTTGGATGGGGGAAGCCAAGCAATGTGGAGGTTACGACAATAGCTAGAACTGGTGCCTTTTCTAT TATGGAGAGCAAAGATGAAGGTGGTGGAGTTCAAGTTGGTTTAGTGTTGAAGGAGCATGAGATGAAACTATTCGGTTCTCTATTTACCAGAGTTAAGATT TCTCAGTCTACATGTTAG
AA sequence Show only first row Show all	>Potri.004G096200.2 pacid=42794294 polypeptide=Potri.004G096200.2.p locus=Potri.004G096200 ID=Potri.004G096200.2.v4.1 annot-version=v4.1 MINSQLDKLGSKEEANQTKPIYLSTYVLVYAYTMVCMLEAKGVNSNDKIKIVIPVDCRARLNPPLPKNYIGNCVSSFDVVVEREDLMKENGVAYVAKRLT EMIKGLENRSVIEGAKERIPYTDWEKFTQTVRAVGTNRFGMYGADFGWGKPSNVEVTTIARTGAFSIMESKDEGGGVQVGLVLKEHEMKLFGSLFTRVKI SQSTC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G096200 [exp]	0	1
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Potri.001G160400 [exp]	10.39	0.9804	ZIP4.2
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.004G155866 [exp]	10.81	0.9773
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G096066 [exp]	11.09	0.9839
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.006G144000 [exp]	11.40	0.9796
AT2G12462			unknown protein		Potri.006G061400 [exp]	12.40	0.9792
AT3G28040			Leucine-rich receptor-like pro...		Potri.014G147300 [exp]	14.42	0.9687
AT3G47430		PEX11B	peroxin 11B (.1)		Potri.001G124400 [exp]	14.49	0.9699
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.013G052900 [exp]	16.88	0.9819
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.002G107800 [exp]	17.54	0.9721
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.013G052800 [exp]	18.11	0.9812

Compare expression of checked genes

Potri.004G096200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.