Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29670 312 / 8e-102 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G39050 309 / 2e-100 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29635 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) AT3G29590 302 / 5e-98 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT5G39090 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) AT5G39080 298 / 4e-96 HXXXD-type acyl-transferase family protein (.1) AT3G29680 277 / 2e-88 HXXXD-type acyl-transferase family protein (.1) AT5G61160 251 / 3e-78 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT1G03495 220 / 3e-66 HXXXD-type acyl-transferase family protein (.1) AT1G03940 213 / 2e-63 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G096132 [exp] 934 / 0 AT3G29670 308 / 2e-100 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) Potri.004G096066 [exp] 823 / 0 AT5G39050 273 / 2e-86 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G093800 [exp] 583 / 0 AT5G39080 302 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Potri.004G103200 [exp] 494 / 8e-173 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 486 / 8e-170 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 478 / 1e-166 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 439 / 4e-151 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 438 / 5e-151 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 437 / 2e-150 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033599 [exp] 339 / 7e-112 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 332 / 4e-109 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 325 / 1e-106 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 323 / 5e-106 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 323 / 6e-106 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10029276 [exp] 317 / 2e-103 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 317 / 3e-103 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10021388 [exp] 305 / 2e-98 AT3G29635 278 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Lus10021389 [exp] 299 / 2e-96 AT3G29590 295 / 4e-95 HXXXD-type acyl-transferase family protein (.1) Lus10035802 [exp] 295 / 3e-94 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.004G096300.1 pacid=42795018 polypeptide=Potri.004G096300.1.p locus=Potri.004G096300 ID=Potri.004G096300.1.v4.1 annot-version=v4.1 ATGGCATCAACCAAGCCAGTAAACGTTCTCGAGGTTTGCCATGTTAGTCCGTCTTCTACCTCACCCGAGTCAAGCACCGAGCTATATCTGCCTCTAATCT TCTCTGATATCTTCAACCTCAAATTCCCTCCGGTTCAAGGCATCTTTTTCTATAAACTCACTGAGTTAACCCCTACTTTCTTTAACTTGGTAATTCTTCC CAAGGTCAAGCACTCACTCTCTTTAACTCTTTCCCACTTCCGTCCTCTTGCCGGTAACCTCACATGGCCTCCAAATTCCATCAAACCCGTCATTACGTAC AATACTCCAGATGATGGTATTAAACTTACAGTTGCCGAGTCCAGTGCAGACTTTGACCATCTCTGTAGTGAAGTGCATGATGCTATTGAGTCACATCATT ATGTGCCAAATGTATCAATATCTGATACTATAGCCTCTACACTTGCTATTCAGATCACTTTATTTCCAAATAAAGGTTTTTGCATCGGCCACACCACTAA CCATGCTGTTCTTGATGGCTTGAGCGTATCCTTTTTCATGAATGCATGGGCTCGCATTTGCAGACAGTTAGTCGATGAAAAAATGGAAATCCCTAGCTTG TTACCGGAAGAACTAACCCCGTTTTTCAATCGAACAGTTGTTCAGGATCCTGAAGGGCTAGACATGTGGTACTTGAATTTCTGGCTGGGAGTAAAACTTC CAGGTTCCGATGACAATACTAGAAGTTTGAAGCCTTTTCCATTTCCAGAAACTCCACCAAACCTGGTAAGAACAACGTTCGAACTCTCTCGTGAAGATAT ACAGCAGCTTCGGGAAATGGTAAAGTCTCAACTGGATAATTTTGGATCCAAAGAGGAAACAAATCAAACAAAGCCAATACATTTGTCGACTTATGTGCTT GTATATGCATATACGTTGGTTTGCATGCTTGAAGCAAAAGGCTTAAATAGCAATGATAAGATTAAAATCTTGATTACGGTAGACTGTAGACCCCGTTTAA ACCCTCCATTACCTAAGAATTATATTGGTAATTGTGTTAGCTCCTTTGATGTGGTTGTGGAAGGAGAAGATCTAATGAAAGAGAATGGGGTTGCGTATGT TGCGAAGAGGCTTACTGAGATGATAAAAGGATTAGAGAATAGATCAGTTTTTGAGGGAGCAAAGGAGAGGTTACCATACAATGACTGGGAACCAGATATT CGACAGGTTCGAGCTGCTGGGACAAACCGATTTGGGATGTATGGGGCAGATTTTGGATGGGGGAAGCCAAGCAATGTGGAGGTTACGACCATAGATAGAT TGGATGCCTTTTCTATTATGGAGAGCAAAGACGAAAGTGGTGGAGTTGAAGTTGGTTTAGTCTTGAAGGAGCATGAAATGAAACTATTCGGTTCTCTATT TGCCAGTGGCCTTCGAATGTAA
AA sequence Show only first row Show all	>Potri.004G096300.1 pacid=42795018 polypeptide=Potri.004G096300.1.p locus=Potri.004G096300 ID=Potri.004G096300.1.v4.1 annot-version=v4.1 MASTKPVNVLEVCHVSPSSTSPESSTELYLPLIFSDIFNLKFPPVQGIFFYKLTELTPTFFNLVILPKVKHSLSLTLSHFRPLAGNLTWPPNSIKPVITY NTPDDGIKLTVAESSADFDHLCSEVHDAIESHHYVPNVSISDTIASTLAIQITLFPNKGFCIGHTTNHAVLDGLSVSFFMNAWARICRQLVDEKMEIPSL LPEELTPFFNRTVVQDPEGLDMWYLNFWLGVKLPGSDDNTRSLKPFPFPETPPNLVRTTFELSREDIQQLREMVKSQLDNFGSKEETNQTKPIHLSTYVL VYAYTLVCMLEAKGLNSNDKIKILITVDCRPRLNPPLPKNYIGNCVSSFDVVVEGEDLMKENGVAYVAKRLTEMIKGLENRSVFEGAKERLPYNDWEPDI RQVRAAGTNRFGMYGADFGWGKPSNVEVTTIDRLDAFSIMESKDESGGVEVGLVLKEHEMKLFGSLFASGLRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29670		PMAT2	phenolic glucoside malonyltran...		Potri.004G096300 [exp]	0	1
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G096425 [exp]	1.41	0.9968
AT3G29670		PMAT2	phenolic glucoside malonyltran...		Potri.004G096132 [exp]	2.44	0.9941
AT4G37470			alpha/beta-Hydrolases superfam...		Potri.005G145000 [exp]	3.16	0.9636
					Potri.004G019733 [exp]	5.19	0.9589
AT4G27700			Rhodanese/Cell cycle control p...		Potri.015G008000 [exp]	6.32	0.9689
AT3G10910			RING/U-box superfamily protein...		Potri.013G157000 [exp]	8.83	0.9611
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Potri.019G034000 [exp]	11.48	0.9549
AT4G18540			unknown protein		Potri.004G054500 [exp]	11.70	0.9194
					Potri.001G158100 [exp]	12.84	0.9404
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Potri.005G245700 [exp]	12.96	0.9595

Compare expression of checked genes

Potri.004G096300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.