Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38210 595 / 0 Protein kinase family protein (.1) AT1G66880 532 / 2e-174 Protein kinase superfamily protein (.1) AT1G18390 483 / 6e-163 Protein kinase superfamily protein (.1.2) AT1G25390 450 / 3e-150 Protein kinase superfamily protein (.1) AT2G23450 296 / 2e-90 Protein kinase superfamily protein (.1.2) AT5G66790 271 / 1e-81 Protein kinase superfamily protein (.1) AT1G69910 269 / 8e-81 Protein kinase superfamily protein (.1) AT5G02070 254 / 6e-75 Protein kinase family protein (.1) AT3G53840 244 / 2e-71 Protein kinase superfamily protein (.1) AT1G16150 245 / 6e-71 WAKL4 wall associated kinase-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G096900 [exp] 913 / 0 AT5G38210 557 / 0.0 Protein kinase family protein (.1) Potri.017G118250 [exp] 833 / 0 AT5G38210 542 / 0.0 Protein kinase family protein (.1) Potri.017G118100 [exp] 824 / 0 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.004G097100 [exp] 724 / 0 AT5G38210 525 / 4e-179 Protein kinase family protein (.1) Potri.012G054725 [exp] 554 / 0 AT1G18390 516 / 2e-176 Protein kinase superfamily protein (.1.2) Potri.015G044750 [exp] 532 / 0 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G045101 [exp] 523 / 3e-178 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G120800 [exp] 480 / 1e-160 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2) Potri.010G121100 [exp] 464 / 1e-155 AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022432 [exp] 473 / 3e-158 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016737 [exp] 468 / 2e-156 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10028494 [exp] 460 / 1e-151 AT1G66880 480 / 2e-152 Protein kinase superfamily protein (.1) Lus10029132 [exp] 442 / 5e-147 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10009150 [exp] 392 / 9e-131 AT1G66880 365 / 1e-120 Protein kinase superfamily protein (.1) Lus10032741 [exp] 288 / 3e-87 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 280 / 3e-84 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 276 / 3e-83 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036691 [exp] 271 / 2e-81 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10014387 [exp] 262 / 3e-78 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G096550.1 pacid=42793788 polypeptide=Potri.004G096550.1.p locus=Potri.004G096550 ID=Potri.004G096550.1.v4.1 annot-version=v4.1 ATGAATTCCTTGGTTTTTTCGTTATCTTCTTTTCTTTCAGTTTCTGTTATTGTATTGTTGCTATTCATTCGAATTCCTTTATCACTAAGCAACAACGACC TGTTCAGTGACTGTAGTAATCAGTTTGTGTGTGGCAATATTACCGCAGACTTTCCCTTCTGGGGAAGTGCCAGACCTTCTTCCTGTGGCATTCCTGAATT GGAACTCAAGTGTGAGAATAATATCACCAAGATGAATATTAACGAGGTTAGATACCGTGTTTTGGACATAAAACAAGATACTGAAATTCTCAGGATTGCA AGAGAGGACAGCTTGGTTGGATTGTGTCCGCCTCAATTTGTGAACAGCACGTTCGATCCGATGATGTTTGAGTCTGTTACTGGTTACATGAACTTTACTT TTGTTTATGGTTGTCTGCCTTTTGATTTAGATGGCCCTGCACTATTCACTTGCAGAATCAATGGGGTTAATTATCAAAGTGGTTTTGTGCTACCAAAAGC TAGTGGTCCTGGGGCTTGTTACAGTAGTGTCTTTTTTCCAGCTCCTGTAATAGCTTTGCCATCAATTCTGGATGTGCCAGCTTTGAAACAATACTTGAAA AAAGGTTTTGAGATAAGATGGAAGGTTGATAGCACAGCATGTAGAGAGTGCTTAAGGTCTGCAGGAGTTTGTGGTTATGACAGTACTTCTAATGAAACAA CTTGTTACTGGCCAAATCAATCTAAAGGATCAAATACATATGCTCCAACCAGTTCAACACCCACTGCTGCTCCTGTTTCAGAGGAGACCTCTAACCCAGA TTCACTTAAAATAGGACTTAGCATAGCAGGTACTGTTGTTGGTGTCTTTTTGGGATGCTGGATCATGACCATTATACAACTGAAGAGAAGAAAAGCTGCC CTACTGAAAAGCAAAGACCTTCCTATAGCAGCTACTCCTTCAAGCAAAGGCCTTGCTACTTCAACTAACCTCTCTCAAACCACCCCTTCTCTTACCCCCT CAAAGTCTGACATTGATAAGGGCAGTACCTACTTTGGAGTGCGGGTGTTCAGCTACAATGAACTTGAGGAAGCCACTAATTGTTTTGATTCTTCAAAAGA ACTTGGAGATGGAGGGTTTGGCACTGTTTACTATGGAGTACTCAGGGATGGGCGTGTGGTTGCTGTCAAGCGCCTATATGAGAGCAACATGAGACGTGCT GAGCAGTTTATGAATGAAATTGAGATCCTAGCTCATTTGCGGCACAAGAACCTGGTGGAACTCTATGGATGCACCTCAAGGCATAGCCGAGAGCTTCTAC TTGTTTATGAATACATTCCTAATGGAACTGTCGCTGATCATCTTCATGGAAGACAGTCGAACTCTGGTTTGCTCACTTGGCCTGTTCGGTTGAGCATTGC TATAGAGACAGCCAGTGCACTTGCATACCTCCACGCTTCAGATGTCATACACCGTGATGTCAAAACCAATAACATTCTCCTAGACAACGACTTCCATGTG AAAGTGGCTGATTTTGGTTTGTCGAGATTGTTCCCAACTGATGTTACTCATGTATCGACTGCTCCACAAGGAACGCCTGGATATGTTGATCCGGAGTATT ATCAATGCTACCAACTGACGGACAAGAGCGACGTTTACAGCTTTGGTGTGGTCTTGATTGAGCTGATATCAGCTTTAGAAGCAGTGGACACCAATAGGCA TCGGCATGATATTAATTTGTCCATCATGGCAGTGAAAAAAATCCAAAACCATGCTTTAAATGAGTTGGTTGATCCATTTCTTGGATTTGACAAGGATTTC GTGGTGAGGAAGATGGTAACATCAGTTGCAGAATTAGCTTTCCGGTGTTTGCAACAACAGAGGGAAATGAGGCCTACTATGGAGGAAGTGTTGGAGATCC TGAGGAGAATTGAGAAAGAAAATTACGGAGCAGAAAAGGCAGATGTATTGGATATTCGTGAGGATGATGTTGGTCTATTGAAGCATCCTCCTCCTCCACT TCAACTATCACCAGATTCTATGAGTGATCAATTTTGA
AA sequence Show only first row Show all	>Potri.004G096550.1 pacid=42793788 polypeptide=Potri.004G096550.1.p locus=Potri.004G096550 ID=Potri.004G096550.1.v4.1 annot-version=v4.1 MNSLVFSLSSFLSVSVIVLLLFIRIPLSLSNNDLFSDCSNQFVCGNITADFPFWGSARPSSCGIPELELKCENNITKMNINEVRYRVLDIKQDTEILRIA REDSLVGLCPPQFVNSTFDPMMFESVTGYMNFTFVYGCLPFDLDGPALFTCRINGVNYQSGFVLPKASGPGACYSSVFFPAPVIALPSILDVPALKQYLK KGFEIRWKVDSTACRECLRSAGVCGYDSTSNETTCYWPNQSKGSNTYAPTSSTPTAAPVSEETSNPDSLKIGLSIAGTVVGVFLGCWIMTIIQLKRRKAA LLKSKDLPIAATPSSKGLATSTNLSQTTPSLTPSKSDIDKGSTYFGVRVFSYNELEEATNCFDSSKELGDGGFGTVYYGVLRDGRVVAVKRLYESNMRRA EQFMNEIEILAHLRHKNLVELYGCTSRHSRELLLVYEYIPNGTVADHLHGRQSNSGLLTWPVRLSIAIETASALAYLHASDVIHRDVKTNNILLDNDFHV KVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLIELISALEAVDTNRHRHDINLSIMAVKKIQNHALNELVDPFLGFDKDF VVRKMVTSVAELAFRCLQQQREMRPTMEEVLEILRRIEKENYGAEKADVLDIREDDVGLLKHPPPPLQLSPDSMSDQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38210			Protein kinase family protein ...		Potri.004G096550 [exp]	0	1
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141600 [exp]	2.82	0.7785
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Potri.011G123500 [exp]	3.74	0.7816	NAC003,ATNAC2.1
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.001G019000 [exp]	4.24	0.8015
AT5G38210			Protein kinase family protein ...		Potri.004G096900 [exp]	5.83	0.7451
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Potri.001G258600 [exp]	6.70	0.7716
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Potri.008G039000 [exp]	7.93	0.7662
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.015G141100 [exp]	8.12	0.7715
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Potri.008G181000 [exp]	10.95	0.7661
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Potri.002G026700 [exp]	11.74	0.7080
AT1G09530	bHLH	PIF3, POC1, PAP...	PHOTOCURRENT 1, PHYTOCHROME-AS...		Potri.013G001300 [exp]	13.00	0.7556

Compare expression of checked genes

Potri.004G096550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.