Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38260 99 / 2e-23 Protein kinase superfamily protein (.1) AT1G66880 88 / 1e-19 Protein kinase superfamily protein (.1) AT1G66910 87 / 3e-19 Protein kinase superfamily protein (.1) AT1G66940 82 / 3e-18 protein kinase-related (.1.2.3) AT1G67000 76 / 1e-15 Protein kinase superfamily protein (.1) AT5G38210 74 / 9e-15 Protein kinase family protein (.1) AT1G66930 71 / 5e-14 Protein kinase superfamily protein (.1) AT1G66920 71 / 7e-14 Protein kinase superfamily protein (.1.2) AT1G18390 62 / 8e-11 Protein kinase superfamily protein (.1.2) AT1G67025 58 / 6e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G096900 [exp] 441 / 9e-153 AT5G38210 557 / 0.0 Protein kinase family protein (.1) Potri.017G118100 [exp] 296 / 4e-96 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.017G117340 [exp] 281 / 1e-90 AT5G38260 456 / 9e-153 Protein kinase superfamily protein (.1) Potri.017G118250 [exp] 257 / 2e-81 AT5G38210 542 / 0.0 Protein kinase family protein (.1) Potri.017G117120 [exp] 254 / 2e-80 AT5G38260 430 / 2e-142 Protein kinase superfamily protein (.1) Potri.017G117400 [exp] 235 / 1e-77 AT1G66930 105 / 2e-25 Protein kinase superfamily protein (.1) Potri.017G116900 [exp] 174 / 3e-50 AT1G66910 477 / 2e-160 Protein kinase superfamily protein (.1) Potri.017G116955 [exp] 98 / 4e-23 AT1G66920 389 / 5e-128 Protein kinase superfamily protein (.1.2) Potri.017G117285 [exp] 86 / 7e-19 AT1G66920 439 / 2e-146 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009151 [exp] 136 / 1e-37 AT1G66880 129 / 2e-32 Protein kinase superfamily protein (.1) Lus10039725 [exp] 137 / 8e-37 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10028494 [exp] 134 / 2e-35 AT1G66880 480 / 2e-152 Protein kinase superfamily protein (.1) Lus10016737 [exp] 50 / 1e-06 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 42 / 0.0003 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.004G096675.1 pacid=42796449 polypeptide=Potri.004G096675.1.p locus=Potri.004G096675 ID=Potri.004G096675.1.v4.1 annot-version=v4.1 ATGTCTTGGTTTATCCTGTTCATAACCATAATCTTTGTCTGTGGTTTCACACTTGTGTTCTCTGCTGATGATGAGCGGTATCTAATCTGCAGAAACTTGT TTGATTGCGGAAATATTAAGGGTATTGGTTATCCTTTCTCGGGATCCAACAGGCCTGATTACTGTGGCTATCCAGGGTTCGGGCTCAATTGCAGTAACCA AGTTCCGGAGATCACAATCACTCAATCGACATACAAAGTCCTTGCCATCAATAATCAGTCACGGACTCTTAACGTTGCTAGAACAGATTACAGAGAAAAT CTGTGTCCTACTCTCCTACTCAACACAACTTTGAATCCCAGTCTTTTGAGTTACACAACGGATGATCATAACATAACAATCTACTATGGTTGCCCCGCTC AAGCTCCTTCAACTTCCTATCTCTCAACTCAGTTTCCATGCAGCATAAACACCACTGAGATGACGGGCTACTTTACAGCAACAGACGACTTCTCTTTCCT TGTTCAAGTACGTCAATCAGCTCTTGAGCCAATTATAGGAAATGCAACTGAAGCAAAGTTGCTTGGAGCTCTTAATCAAGGTTTTGGGCTGGTGTGGAAT GCAAATGATACCTTATGTGATACATGCAATTCATCTGGTGGTCAGTGTGGGTACGACCAGACAACTAAAGCATTCGCTTGCTATTGTGCCGATCGACCTC GAGATTTTAATTGCCTACCATCGCCACCTAGTCAGTCAACA
AA sequence Show only first row Show all	>Potri.004G096675.1 pacid=42796449 polypeptide=Potri.004G096675.1.p locus=Potri.004G096675 ID=Potri.004G096675.1.v4.1 annot-version=v4.1 MSWFILFITIIFVCGFTLVFSADDERYLICRNLFDCGNIKGIGYPFSGSNRPDYCGYPGFGLNCSNQVPEITITQSTYKVLAINNQSRTLNVARTDYREN LCPTLLLNTTLNPSLLSYTTDDHNITIYYGCPAQAPSTSYLSTQFPCSINTTEMTGYFTATDDFSFLVQVRQSALEPIIGNATEAKLLGALNQGFGLVWN ANDTLCDTCNSSGGQCGYDQTTKAFACYCADRPRDFNCLPSPPSQST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38260			Protein kinase superfamily pro...		Potri.004G096675 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447700 [exp]	16.82	0.8221
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447766 [exp]	29.39	0.8154
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Potri.016G072000 [exp]	44.59	0.7587
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Potri.016G068132 [exp]	50.39	0.8039
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.006G221400 [exp]	110.33	0.6849
AT3G27785	MYB	PGA37, ATMYB118	PLANT GROWTH ACTIVATOR 37, myb...		Potri.001G347200 [exp]	117.72	0.7947
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Potri.001G447900 [exp]	144.72	0.7967
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074700 [exp]	152.71	0.7497
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074800 [exp]	170.74	0.6932
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Potri.014G152100 [exp]	172.88	0.7750

Compare expression of checked genes

Potri.004G096675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.