Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38210 559 / 0 Protein kinase family protein (.1) AT1G66880 538 / 4e-176 Protein kinase superfamily protein (.1) AT1G18390 491 / 7e-166 Protein kinase superfamily protein (.1.2) AT1G25390 449 / 2e-149 Protein kinase superfamily protein (.1) AT2G23450 296 / 5e-90 Protein kinase superfamily protein (.1.2) AT5G66790 269 / 1e-80 Protein kinase superfamily protein (.1) AT1G69910 267 / 9e-80 Protein kinase superfamily protein (.1) AT5G02070 252 / 4e-74 Protein kinase family protein (.1) AT3G53840 241 / 3e-70 Protein kinase superfamily protein (.1) AT1G16150 243 / 8e-70 WAKL4 wall associated kinase-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G118100 [exp] 1055 / 0 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.017G118250 [exp] 998 / 0 AT5G38210 542 / 0.0 Protein kinase family protein (.1) Potri.004G096550 [exp] 893 / 0 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.004G097100 [exp] 701 / 0 AT5G38210 525 / 4e-179 Protein kinase family protein (.1) Potri.015G044750 [exp] 558 / 0 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G054725 [exp] 556 / 0 AT1G18390 516 / 2e-176 Protein kinase superfamily protein (.1.2) Potri.015G045101 [exp] 543 / 0 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G120800 [exp] 509 / 2e-171 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2) Potri.010G121100 [exp] 459 / 2e-153 AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016737 [exp] 474 / 9e-159 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 456 / 2e-151 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10028494 [exp] 449 / 1e-146 AT1G66880 480 / 2e-152 Protein kinase superfamily protein (.1) Lus10029132 [exp] 439 / 1e-145 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10009150 [exp] 391 / 5e-130 AT1G66880 365 / 1e-120 Protein kinase superfamily protein (.1) Lus10039725 [exp] 308 / 6e-95 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10032741 [exp] 287 / 2e-86 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 278 / 3e-83 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 273 / 5e-82 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036691 [exp] 269 / 1e-80 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding CL0016 [poplar] [flax] PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.004G096900.7 pacid=42796387 polypeptide=Potri.004G096900.7.p locus=Potri.004G096900 ID=Potri.004G096900.7.v4.1 annot-version=v4.1 ATGAACAGTCTTCCTTTCAATCCTCTCTTTGTGAAAATGCGACCACATCTCCTTCTGGCCATGTCTTGGTTTATCCTGTTCATAACCATAATCTTTGTCT GTGGTTTCACACTTGTGTTCTCTGCTGATGATGAGCGGTATCTAATCTGCAGAAACTTGTTTGATTGCGGAAATATTAAGGGTATTGGTTATCCTTTCTC GGGATCCAATAGGCCTGATTACTGTGGCTATCCAGGGTTCGGGCTCAATTGCAGTAACCAAATTCCGGAGATCACAATCACTCAATCGACATACAAAGTC CTTGCCATCAATAACCAGTCACGGACTATTAACGTTGCTAGAACAGATTACAGAGAAAATCTCTGTCCTACTCTCCTACTCAACACAACTTTGAATCCCA GTCTTCTGAATTACACAACGGATGATCATAACATAACAATCTACTATGGTTGCCCCGCTCAAGGTCCGCCTACTTCCCATCTCTTAACTCAGTTTCCATG CAGCATAAACACCACTGAGATGACGGGCTACTTTACAGCGACAGACGACTTCTCTTTCCTTGGTAACCTTGCTTCTAACTTAATCCGTTACCTGGAATCC TGCGACAACAGTGTTAAAGTTCAAGTACGTCAATCAGCTCTTGAGCCAATTATAGCAAATGCAACTGTAGCAAAGTTGCTTGGAGCTCTTAATCAAGGTT TTGGGCTGGTGTGGAATGCAAATGATACCTTATGTGATACATGCAATTCTTCTGGTGGTCAGTGTGGGTACGACCAGACAACTAAAGCATTCGCTTGCTA TTGTGCCGATCAACCTCGAGATTTTAATTGCCTACCATCACCACCTAGTCAGTCAACAAAGAAGATCTCTAACCCAGATTCACTTAAAATAGGACTTAGC ATAGCAGGTACTGTTGTCGGTGTCTTTTTGGGATGCTGGATCATGACCATTATACAACGGAAGAGAAGAAAAGCTGCCCTACTGAAAAGCAAAGACCTTC CTATAGCAGCTACTCCGTCAAGAAAAGGCCTTGCTACTTCAACTAACCTCTCTCAAACCACCCCTTCTCTTACCCCCTCAAAGTCTGACATTGGTAAGGG CAGTACCTACTTTGGAGTGCGGGTGTTCAGCTACAATGAACTTGAGGAAGCCACTAATTGTTTTGATTCTTCAAAAGAACTTGGAGATGGAGGGTTTGGC ACTGTTTACTATGGAGTACTCAGGGATGGCCGTGTGGTTGCTGTCAAGCGCCTATATGAGAGCAACATGAGACGTGCTGAGCAGTTTATGAATGAAATTG AGATCCTAGCTCATTTGCGGCACATGAACCTGGTGGAACTCTATGGATGCACCTCAAGGCATAGCCGAGAGCTTCTACTTGTTTATGAATACATTCCTAA TGGAACTGTCGCTGATCATCTTCATGGAAGACAGTCGAACTCTGGTTTGCTCACTTGGCCTTTTCGGTTGAGCATTGCTATAGAGACAGCCAGTGCACTT GCATACCTCCACGCTTCAGATGTCATACACCGTGATGTCAAAACCAATAACATTCTCCTAGACAACGACTTCCATGTGAAAGTGGCTGATTTTGGTTTGT CGAGATTGTTCCCAACTGATGTTACTCATGTATCGACTGCTCCACAAGGAACGCCTGGATATGTTGATCCGGAGTATTATCAATGCTACCAACTGACGGA CAAGAGCGACGTTTACAGCTTTGGTGTGGTCTTGATTGAGCTGATATCAGCTTTAGAAGCAGTGGACACCAATAGGCATCGGCATGATATTAATTTGTCC ATCATGGCAGTGAAAAAAATCCAAAACCATGCTTTAAATGAGTTGGTTGATCCATTTCTTGGATTTGACAAGGATTTCGTGGTGAGGAAGATGGTAACAT CAGTTGCAGAATTAGCTTTCCGGTGTTTGCAACAACAGAGGGAAATGAGGCCTACTATGGAGGAAGTGTTGGAGATCCTGAGGAGAATTGAGAAAGAAAA TTACGGAGCAGAAAAGGCAGATGAATTGGATATTCGTGAGGATGATGTTGGTCTATTGAAGCATCCTCCTCCTCCACTTCAACTTTCACCAGATTCTATG AGTGATCAATTTTGA
AA sequence Show only first row Show all	>Potri.004G096900.7 pacid=42796387 polypeptide=Potri.004G096900.7.p locus=Potri.004G096900 ID=Potri.004G096900.7.v4.1 annot-version=v4.1 MNSLPFNPLFVKMRPHLLLAMSWFILFITIIFVCGFTLVFSADDERYLICRNLFDCGNIKGIGYPFSGSNRPDYCGYPGFGLNCSNQIPEITITQSTYKV LAINNQSRTINVARTDYRENLCPTLLLNTTLNPSLLNYTTDDHNITIYYGCPAQGPPTSHLLTQFPCSINTTEMTGYFTATDDFSFLGNLASNLIRYLES CDNSVKVQVRQSALEPIIANATVAKLLGALNQGFGLVWNANDTLCDTCNSSGGQCGYDQTTKAFACYCADQPRDFNCLPSPPSQSTKKISNPDSLKIGLS IAGTVVGVFLGCWIMTIIQRKRRKAALLKSKDLPIAATPSRKGLATSTNLSQTTPSLTPSKSDIGKGSTYFGVRVFSYNELEEATNCFDSSKELGDGGFG TVYYGVLRDGRVVAVKRLYESNMRRAEQFMNEIEILAHLRHMNLVELYGCTSRHSRELLLVYEYIPNGTVADHLHGRQSNSGLLTWPFRLSIAIETASAL AYLHASDVIHRDVKTNNILLDNDFHVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLIELISALEAVDTNRHRHDINLS IMAVKKIQNHALNELVDPFLGFDKDFVVRKMVTSVAELAFRCLQQQREMRPTMEEVLEILRRIEKENYGAEKADELDIREDDVGLLKHPPPPLQLSPDSM SDQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38210			Protein kinase family protein ...		Potri.004G096900 [exp]	0	1
AT5G38210			Protein kinase family protein ...		Potri.004G096550 [exp]	5.83	0.7451
AT5G39200			unknown protein		Potri.004G120400 [exp]	15.36	0.7478
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Potri.003G049300 [exp]	21.14	0.6954
AT1G21400			Thiamin diphosphate-binding fo...		Potri.002G074900 [exp]	21.54	0.6797
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Potri.006G091800 [exp]	33.58	0.6481
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Potri.011G123500 [exp]	51.26	0.6329	NAC003,ATNAC2.1
AT1G05630		AT5PTASE13, 5PT...	Endonuclease/exonuclease/phosp...		Potri.017G006900 [exp]	57.79	0.6135
AT2G44065			Ribosomal protein L2 family (....		Potri.007G142200 [exp]	96.41	0.5795
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Potri.014G040500 [exp]	105.69	0.5906
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Potri.001G093800 [exp]	121.22	0.5635

Compare expression of checked genes

Potri.004G096900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.