Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27500 462 / 5e-163 Glycosyl hydrolase superfamily protein (.1.2.3) AT1G32860 374 / 5e-128 Glycosyl hydrolase superfamily protein (.1) AT5G42100 352 / 2e-119 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT4G18340 350 / 9e-119 Glycosyl hydrolase superfamily protein (.1) AT1G30080 350 / 1e-118 Glycosyl hydrolase superfamily protein (.1) AT3G15800 343 / 5e-116 Glycosyl hydrolase superfamily protein (.1) AT2G26600 309 / 7e-103 Glycosyl hydrolase superfamily protein (.1.2) AT4G26830 309 / 5e-102 O-Glycosyl hydrolases family 17 protein (.1) AT5G24318 303 / 1e-99 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G55180 297 / 4e-97 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G202400 [exp] 553 / 0 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.009G163700 [exp] 526 / 0 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.011G152400 [exp] 394 / 5e-136 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.001G449100 [exp] 393 / 3e-135 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.011G084900 [exp] 361 / 5e-123 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G132700 [exp] 353 / 6e-120 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.003G032600 [exp] 345 / 5e-117 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 339 / 5e-114 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.018G129500 [exp] 320 / 6e-107 AT2G26600 543 / 0.0 Glycosyl hydrolase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004869 [exp] 471 / 2e-166 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10020618 [exp] 471 / 8e-166 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10001660 [exp] 386 / 1e-133 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10008277 [exp] 385 / 3e-132 AT1G32860 483 / 6e-170 Glycosyl hydrolase superfamily protein (.1) Lus10033244 [exp] 379 / 6e-130 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1) Lus10017344 [exp] 377 / 2e-129 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10038501 [exp] 367 / 7e-126 AT4G18340 484 / 6e-172 Glycosyl hydrolase superfamily protein (.1) Lus10023309 [exp] 364 / 5e-124 AT4G18340 483 / 2e-170 Glycosyl hydrolase superfamily protein (.1) Lus10028122 [exp] 357 / 1e-121 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10042825 [exp] 332 / 1e-112 AT4G18340 479 / 1e-170 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.004G097400.1 pacid=42796629 polypeptide=Potri.004G097400.1.p locus=Potri.004G097400 ID=Potri.004G097400.1.v4.1 annot-version=v4.1 ATGGCCACTTGCTTAGTCCTTTTACGTCTTCTTTTCTCGCTTCTTGTTATTTGGGGTTCAGCTGTCCAAATCCATGGCGTTGAACTTGGGATTAACTATG GTCAGATTGCCAACGATCTCCCATCACCCACTCTAGCAGCTGTGCTGCTTCAATCTCTCAATGTCCATAGGGTAAAACTATTTGATGCTGATCTCAATGT CCTAATTGCCTTTTCCAATTCTAATATTGAGCTCATTATTGGACTTGGCAATGAGGACATTCAAAAAATGACTGTTCCCACAGAAGCTGAAAATTGGATT CAACAGAATGTTCAGCCCCATATCCCTCAAACCAAAATCACTTGCATCGCTGTCGGAAACGAGGTCTTCAGCAGTAATGATGCCCAGTTAATGTTCAACC TTCTCCCAGCAATGAAAATGATTCATAAAACTCTTGTGAATCTTGGATTAGATAAACAAGTGATGATCACTACTCCACATTCTTTTAACATCTTGGAAAA TTCCTATCCTCCTTCATGTGGCACTTTTCGAGAAGATCTTGCTGAATACATCAAGCCTTTATTGAGTTTTCTTTCTCAAATCAAGTCGCCTTTCTTTATC AATGCGTATCCATTTTTTGCATACAAGGCTGACCCGACTCAGATTTCTCTGGACTATGTACTTTTCCAGCCTAACAAAGGGATGAAAGATCCAACTACTA ATTTGCTTTATGATAACATGTTGTATGCTCAAGTAGATGCCGTGTATTCAGCAATGGGGCACACGGATATTGAAGTTAAGATTTCAGAAACAGGCTGGCC ATCGAAGGGTGACCCTGATGAGGTGGGATCAACACCAGAAAATGCAAGGCTATATCATAGTAATTTGATCAAAAGAATTCAGGAGAAGCAAGGTACACCG GCAAAACCATCAGTCCCGATAGAAGTATATGTTTCCGCACTCTTTAACGAGGATTTAAAAACTGGTCCAACATCTGAAAGGAACTATGGACTCTTCTATC CTGATTGTTCCCCAGTTTATAATATTGGATTGCAGGATCATTTTCCTACTAATGGAGTAGTTTATTCTTCAGCAGTATCCAATATAAATGCATTGTCTGT CTTTAGCTTGCTGATCTTTGTTATGGCGTACGTAATCCTTGTTTAG
AA sequence Show only first row Show all	>Potri.004G097400.1 pacid=42796629 polypeptide=Potri.004G097400.1.p locus=Potri.004G097400 ID=Potri.004G097400.1.v4.1 annot-version=v4.1 MATCLVLLRLLFSLLVIWGSAVQIHGVELGINYGQIANDLPSPTLAAVLLQSLNVHRVKLFDADLNVLIAFSNSNIELIIGLGNEDIQKMTVPTEAENWI QQNVQPHIPQTKITCIAVGNEVFSSNDAQLMFNLLPAMKMIHKTLVNLGLDKQVMITTPHSFNILENSYPPSCGTFREDLAEYIKPLLSFLSQIKSPFFI NAYPFFAYKADPTQISLDYVLFQPNKGMKDPTTNLLYDNMLYAQVDAVYSAMGHTDIEVKISETGWPSKGDPDEVGSTPENARLYHSNLIKRIQEKQGTP AKPSVPIEVYVSALFNEDLKTGPTSERNYGLFYPDCSPVYNIGLQDHFPTNGVVYSSAVSNINALSVFSLLIFVMAYVILV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27500			Glycosyl hydrolase superfamily...		Potri.004G097400 [exp]	0	1
					Potri.018G058450 [exp]	1.00	0.7217
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G177400 [exp]	3.87	0.6891
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.007G105200 [exp]	4.24	0.6829
					Potri.018G054600 [exp]	4.58	0.6306
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G023002 [exp]	6.00	0.6659
					Potri.017G082950 [exp]	11.83	0.6358
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.012G035600 [exp]	21.21	0.7095
AT5G47530			Auxin-responsive family protei...		Potri.019G096600 [exp]	21.90	0.6764
					Potri.019G014310 [exp]	25.92	0.6173
					Potri.003G092750 [exp]	31.32	0.5562

Compare expression of checked genes

Potri.004G097400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.