Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	DWF7.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02580 464 / 2e-167 BUL1, DWF7, STE1 DWARF 7, BOULE 1, sterol 1 (.1) AT3G02590 424 / 2e-151 Fatty acid hydroxylase superfamily protein (.1) AT2G29390 49 / 2e-06 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT1G07420 48 / 2e-06 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT1G69640 45 / 2e-05 SBH1 sphingoid base hydroxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G116600 [exp] 530 / 0 AT3G02580 455 / 1e-163 DWARF 7, BOULE 1, sterol 1 (.1) Potri.009G037400 [exp] 47 / 4e-06 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.001G245300 [exp] 47 / 4e-06 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.002G061400 [exp] 42 / 0.0002 AT1G69640 311 / 1e-107 sphingoid base hydroxylase 1 (.1) Potri.005G200000 [exp] 41 / 0.0004 AT1G69640 315 / 7e-109 sphingoid base hydroxylase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009147 [exp] 456 / 8e-164 AT3G02580 439 / 1e-157 DWARF 7, BOULE 1, sterol 1 (.1) Lus10028498 [exp] 233 / 4e-77 AT3G02580 236 / 1e-78 DWARF 7, BOULE 1, sterol 1 (.1) Lus10016492 [exp] 49 / 1e-06 AT1G07420 463 / 3e-167 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10040739 [exp] 49 / 1e-06 AT2G29390 454 / 5e-164 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) Lus10001556 [exp] 47 / 1e-05 AT1G07420 458 / 3e-165 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10037183 [exp] 42 / 0.0004 AT1G69640 422 / 3e-151 sphingoid base hydroxylase 1 (.1) Lus10012832 [exp] 41 / 0.0005 AT1G14290 414 / 5e-148 sphingoid base hydroxylase 2 (.1) Lus10030481 [exp] 41 / 0.0005 AT1G14290 414 / 4e-148 sphingoid base hydroxylase 2 (.1) Lus10036744 [exp] 41 / 0.0006 AT1G14290 421 / 7e-151 sphingoid base hydroxylase 2 (.1) Lus10004324 [exp] 41 / 0.0007 AT4G22756 345 / 3e-120 sterol C4-methyl oxidase 1-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [poplar] [flax] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Potri.004G097500.1 pacid=42796759 polypeptide=Potri.004G097500.1.p locus=Potri.004G097500 ID=Potri.004G097500.1.v4.1 annot-version=v4.1 ATGGAGGGAGACAAGTACTTGCAGGAATTCTTGGTTGAGACATCAATGTTCAACAGCATTGTTTTGGGTCATTTGTTACCGTCCAATTGGTGGGTCACTC TGCCTCATTTCTTGCAGACTTGGCTTCGTAACTACATTGCTGGAACTCTCCTTTACTTCATCTCTGGTTTCCTCTGGTGCTTCTATATTTATTACTTGAA ACGCAACGTTTATGTCCCTAAAGATACCATACCTTCAAACAGAGCCATGCTCTTACAAATATATGTTGCTATGAAGGCTATGCCATGGTACACTCTTCTT CCAACAGTTTCTGAGTACATGATTGAAAATGGCTGGACAAAGTGTTTCTCTAGCATATCTGAAATTGGTTGGTTCGCCTACATCATATATTTTCCTATAT ATCTTGTTATTGTGGAGTTTGGGATTTACTGGATGCATAGAGAATTGCATGATATAAAACCTCTATACAAGTATCTTCATGCAACCCATCACATCTACAA CAAACAGAACACTCTATCTCCATTTGCTGGTTTGGCATTTCACCCAGTTGACGGGATTCTACAAGCTGTACCACATGTTATAGCTCTGTTTCTTGTGCCA ACCCATTTTAGATCGCACGTAGCCCTCTTATTCATCGAGGCTATATGGACAGCAAACATCCATGATTGCATCCATGCCAACCTATGGCCCGTGATGGGTG CTGGGTACCACACCATTCACCATACCACATACAAGCATAATTACGGCCATTATACTATATGGATGGATTGGATGCTGGGAACCCTTCGTGACCCAGAGGA TGATTCATGCCAGAGAGCGCAGAAGGTGCAATGA
AA sequence Show only first row Show all	>Potri.004G097500.1 pacid=42796759 polypeptide=Potri.004G097500.1.p locus=Potri.004G097500 ID=Potri.004G097500.1.v4.1 annot-version=v4.1 MEGDKYLQEFLVETSMFNSIVLGHLLPSNWWVTLPHFLQTWLRNYIAGTLLYFISGFLWCFYIYYLKRNVYVPKDTIPSNRAMLLQIYVAMKAMPWYTLL PTVSEYMIENGWTKCFSSISEIGWFAYIIYFPIYLVIVEFGIYWMHRELHDIKPLYKYLHATHHIYNKQNTLSPFAGLAFHPVDGILQAVPHVIALFLVP THFRSHVALLFIEAIWTANIHDCIHANLWPVMGAGYHTIHHTTYKHNYGHYTIWMDWMLGTLRDPEDDSCQRAQKVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Potri.004G097500 [exp]	0	1	DWF7.2
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Potri.014G043700 [exp]	4.89	0.6995
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Potri.008G060600 [exp]	7.00	0.7687
AT3G61610			Galactose mutarotase-like supe...		Potri.002G167200 [exp]	17.66	0.6611
AT4G13360			ATP-dependent caseinolytic (Cl...		Potri.006G156350 [exp]	47.43	0.6581
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Potri.009G159900 [exp]	47.62	0.6876
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.002G154400 [exp]	56.00	0.6166
AT1G50710			unknown protein		Potri.011G090800 [exp]	57.46	0.6914
AT2G30942			Protein of unknown function (D...		Potri.002G263300 [exp]	68.23	0.6887
AT1G53120			RNA-binding S4 domain-containi...		Potri.011G119800 [exp]	92.79	0.6153
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Potri.005G179200 [exp]	101.46	0.6271

Compare expression of checked genes

Potri.004G097500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.