Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16170 453 / 5e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 388 / 1e-133 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 370 / 7e-127 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68390 360 / 2e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 359 / 2e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 355 / 2e-120 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 347 / 1e-117 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G10880 351 / 1e-115 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 335 / 1e-112 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 305 / 2e-101 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G045500 [exp] 442 / 6e-155 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 425 / 7e-148 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 390 / 2e-134 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 382 / 2e-131 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 367 / 8e-126 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 365 / 8e-125 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 354 / 2e-120 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 349 / 1e-118 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 340 / 4e-115 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036774 [exp] 424 / 2e-148 AT5G16170 350 / 1e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 363 / 2e-123 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 363 / 4e-123 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 353 / 5e-120 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 353 / 5e-120 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 350 / 7e-119 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005108 [exp] 347 / 9e-119 AT1G10880 330 / 4e-109 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 350 / 1e-118 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10003499 [exp] 348 / 4e-118 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 354 / 5e-118 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.004G097700.2 pacid=42796192 polypeptide=Potri.004G097700.2.p locus=Potri.004G097700 ID=Potri.004G097700.2.v4.1 annot-version=v4.1 ATGGCTAACGAGCAATATCTACGAACCCTATCGACTTTGATCCCTTTCAAGCCCCATTCACAACTAGCCCATGTCTTCCATTTCATGTTCTTCGTTTTCG GCTTGTCACTTGGAATGATAGTTTGTCTGTATCTCAGGAGTTTCACTTTACAAGCCACTCCCAGCCCTATGTTTTCACCAATACCATCAAAGTCATTGCT GGTAGAAACAATAAAAGGAACGCATATTTACATGAAAGAACAGGAACTCCTCGCAATGCACAATATGAGTGACGAGGAGTTGCTGAGGAGAGCATCCATG GTCCCGATAGTTCAAGAATCTGCTCAGAAACAGGCTCCAAAAGTGGCTTTTATGTTCTTGACAAATGGGCCACTTCCGTTGTCTCTCCTGTGGGAGAAGT TCTTTGAAGGACATGAAGGACTCTACTCCATTTATGTGCACCCACATCCCTCTTACAATGATTCATGGCCTCGAAGTTCTGTCTTCTTTGGTAGAAGAAT TCCTAGCCAGGCAGTCTACTGGGGAACTGGAACAATGATAGATGCCGAGAGACGCTTGTTAGCGAATGCCCTTCTTGACTCCTCCAACCAAAGATTTGTC TTGCTCTCCGAATCTTGTATTCCACTGTTCAATTTCAAGACAACATACGACCACCTCATGAACTCAAATATAAGCTTCCTAGGCTCATTTGACGATCCAA GAAAACCAGGTCGTGGTCGGTACAACCCTAGAATGTGGCCTGCAATAAACATTACCGATTGGCGAAAAGGATCACAATGGTTTGAGGTGCACCGAGACAT TGCGGTTCACATTATTTCCGATCAAAAATATTACCAAATCTTTCAAGAGCATTGTCACCCGCCATGTTACATGGATGAACATTATTTTCCAACATTGGTG AACATACTTTATCCTGAATTAAATTCGAATCGGAGCATCACTTGGGTGGATTGGTCAAGGGGCGGTCCTCATCCAGGGAAATTCCGGTGGGCTGATATTA CAGACGAATTCTTGAATCAAATTCGGCATGGTTCCGAATGCGTTTATAATGGTAACACAACCTCAATGTGTTATCTCTTTGCCAGAAAGTTCTTACCTCA AACACTAGAACCTTTGCTAAGGATCGCTCCTTTGCTGCATGTTTTTGATCCTTGA
AA sequence Show only first row Show all	>Potri.004G097700.2 pacid=42796192 polypeptide=Potri.004G097700.2.p locus=Potri.004G097700 ID=Potri.004G097700.2.v4.1 annot-version=v4.1 MANEQYLRTLSTLIPFKPHSQLAHVFHFMFFVFGLSLGMIVCLYLRSFTLQATPSPMFSPIPSKSLLVETIKGTHIYMKEQELLAMHNMSDEELLRRASM VPIVQESAQKQAPKVAFMFLTNGPLPLSLLWEKFFEGHEGLYSIYVHPHPSYNDSWPRSSVFFGRRIPSQAVYWGTGTMIDAERRLLANALLDSSNQRFV LLSESCIPLFNFKTTYDHLMNSNISFLGSFDDPRKPGRGRYNPRMWPAINITDWRKGSQWFEVHRDIAVHIISDQKYYQIFQEHCHPPCYMDEHYFPTLV NILYPELNSNRSITWVDWSRGGPHPGKFRWADITDEFLNQIRHGSECVYNGNTTSMCYLFARKFLPQTLEPLLRIAPLLHVFDP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16170			Core-2/I-branching beta-1,6-N-...		Potri.004G097700 [exp]	0	1
AT2G12646			PLATZ transcription factor fam...		Potri.018G116000 [exp]	5.91	0.7466
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Potri.014G073700 [exp]	11.48	0.7339
AT3G57170			N-acetylglucosaminyl transfera...		Potri.006G044500 [exp]	13.49	0.7300
AT5G22930			Protein of unknown function (D...		Potri.010G229200 [exp]	38.20	0.7502
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Potri.001G239500 [exp]	41.49	0.7179
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Potri.001G085100 [exp]	47.43	0.6986
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.004G205000 [exp]	60.92	0.6732
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Potri.006G068300 [exp]	71.41	0.6622
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.008G156700 [exp]	73.82	0.6538
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.001G048200 [exp]	74.89	0.6862

Compare expression of checked genes

Potri.004G097700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.