Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16150 656 / 0 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G05030 310 / 8e-99 Major facilitator superfamily protein (.1) AT1G67300 287 / 2e-90 Major facilitator superfamily protein (.1.2) AT1G79820 283 / 5e-89 SGB1 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) AT2G43330 169 / 4e-46 ATINT1 inositol transporter 1 (.1) AT3G05150 164 / 3e-44 Major facilitator superfamily protein (.1) AT1G54730 161 / 2e-43 Major facilitator superfamily protein (.1.2.3) AT1G08930 157 / 1e-41 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT2G16130 157 / 2e-41 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G20780 157 / 2e-41 AtPLT4 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G116400 [exp] 542 / 0 AT5G16150 477 / 4e-167 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.014G060800 [exp] 314 / 2e-100 AT1G05030 752 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185300 [exp] 303 / 2e-96 AT1G79820 723 / 0.0 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Potri.018G083200 [exp] 291 / 7e-92 AT1G67300 710 / 0.0 Major facilitator superfamily protein (.1.2) Potri.013G135200 [exp] 172 / 4e-47 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.017G032200 [exp] 171 / 1e-46 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.010G026500 [exp] 166 / 5e-45 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 167 / 6e-45 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 163 / 4e-44 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009158 [exp] 708 / 0 AT5G16150 781 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10028486 [exp] 705 / 0 AT5G16150 780 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10033568 [exp] 672 / 0 AT5G16150 763 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10017610 [exp] 668 / 0 AT5G16150 756 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10035315 [exp] 283 / 4e-88 AT1G05030 673 / 0.0 Major facilitator superfamily protein (.1) Lus10030010 [exp] 272 / 4e-84 AT1G05030 645 / 0.0 Major facilitator superfamily protein (.1) Lus10034930 [exp] 246 / 2e-74 AT1G67300 615 / 0.0 Major facilitator superfamily protein (.1.2) Lus10025565 [exp] 182 / 1e-50 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10027026 [exp] 177 / 9e-49 AT2G43330 769 / 0.0 inositol transporter 1 (.1) Lus10018581 [exp] 172 / 1e-46 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.004G097800.5 pacid=42794216 polypeptide=Potri.004G097800.5.p locus=Potri.004G097800 ID=Potri.004G097800.5.v4.1 annot-version=v4.1 ATGCAAGCAGCGGTAATGTATGGAGGAGTCGTCGTCAAAGGTAGCGTTAACAGCAATTCTACAAGCCTAGCAGTTTGCTTTTCCAGAGCTCAAAAAGGCC GGAAGCAGAAGCAACTCTCATCCTCCATTGATTTCAGCAACGCAAACTGTCAACTACTATCTTCTTCTTCTTCTTCTTGCATGCCTCACCGCACCTCTTG TTTCGGATTGCGTCTCGATTCGTTCTCTATGGGAACCGAACTCACTCGCTCCTCTCTTTTCCGCTCCCGCCCCATCGTCAAAGCTCTCGCTTCTGGAGGA GGAGGAGTGGGAGATGTGGAAGAAGGTAGGCCAATAAAATCGGTTGAGGACGCTAATTATGTTGTACTGCCGCAGCAGCAGCAGGGGAAAGCTTCGACCG GAACGGTTTTTCCGTTTGTTGGAGTTGCTTGTTTAGGGGCTACTTTGTTTGGTTATCATTTAGGGGTGGTGAATGGTTCTCTTGAGTATCTTGCTAAGGA TCTTGGGATTGTCGAAAACACGGCCTTACAAGGATGGATTGTTAGCACACTGCTTGCTGGTGCTACTGTTGGTTCATTTACTGGAGGAACATTGGCTGAT AAGTTTGGAAGAACAAGGACTTTTCAGTTGGATGCAATTCCACTTACAATTGGAGCATTGCTTTGTGCTACTGCCCAGAGCGTACAAACTATGATAATTG GGCGTCTTCTTGCTGGTATAGGAATTGGCATTTCTTCTGCTATCGTGCCACTTTACATATCTGAGATCTCACCAACTGAAATCCGTGGTGCACTGGGGTC TATAAACCAACTTTTTATATGTATTGGGATCCTTTTGGCTTTGGTGGCTGGATTACCACTGGCAGGAAATCCTATATGGTGGAGGACAATGTTTGGCATT TCAGCTGTCCCTGCTGTTCTATTGGCTTTGGGAATGGCATTTTCTCCAGAAAGTCCACGGTGGCTTTTCCAGCAAGGAAAATTTTCTGAAGCTGAAAAGT CCATAAAGACACTTAACGGAAAAGAAAGAGTTGCTGATGTCATGACCGACTTAACTGTGGGTAGTCAAGGTTCTGCTGAGCCAGAAGCTGGATGGTTTGA TCTATTTAGCAGCCGCTATTGGAAAGTTGTGAGCGTTGGTGTAGCACTTTTCTTTTTCCAACAGATGGCTGGGATAAATGCTGTGGTGTATTATTCAACT GCTGTGTTTCGTAGTGCTGGTATTGCATCAGATGTTGCTGCTAGTGCTCTTGTTGGGGCATCAAACGTCTTTGGCACAACTATTGCATCTTCCTTAATGG ACAGACAAGGAAGGAAGAGTCTTCTAATCACAAGCTTTTTTGGAATGGCTGCCTCAATGCTGCTGCTTTCCTTGTCCTTCACTTGGAAGGCCCTGGCACC ATATTCTGGAACCCTTGCAGTTCTAGGGACAGTTTGCTATGTGTTGTCATTTTCACTTGGTGCTGGTCCTGTGCCAGCTCTTCTTCTTCCAGAGATATTT GCCTCCAGAATTAGAGCGAAAGCAGTTGCTTTATCCTTGGGCATGCACTGGGCTGCAAATTTTGTCATCGGCCTGTATTTCTTGAGCTTCGTGAACAGGT TTGGGATCAGCTCTGTGTATTTAGGATTTTCCGGCATCTGTCTTTCTGCTGTGGTGTACATAGCAGCTAATGTTGTGGAAACAAAGGGACGCTCGTTGGA GGAAATAGAGCGAGCTCTTAACCCGACAATTTGA
AA sequence Show only first row Show all	>Potri.004G097800.5 pacid=42794216 polypeptide=Potri.004G097800.5.p locus=Potri.004G097800 ID=Potri.004G097800.5.v4.1 annot-version=v4.1 MQAAVMYGGVVVKGSVNSNSTSLAVCFSRAQKGRKQKQLSSSIDFSNANCQLLSSSSSSCMPHRTSCFGLRLDSFSMGTELTRSSLFRSRPIVKALASGG GGVGDVEEGRPIKSVEDANYVVLPQQQQGKASTGTVFPFVGVACLGATLFGYHLGVVNGSLEYLAKDLGIVENTALQGWIVSTLLAGATVGSFTGGTLAD KFGRTRTFQLDAIPLTIGALLCATAQSVQTMIIGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSINQLFICIGILLALVAGLPLAGNPIWWRTMFGI SAVPAVLLALGMAFSPESPRWLFQQGKFSEAEKSIKTLNGKERVADVMTDLTVGSQGSAEPEAGWFDLFSSRYWKVVSVGVALFFFQQMAGINAVVYYST AVFRSAGIASDVAASALVGASNVFGTTIASSLMDRQGRKSLLITSFFGMAASMLLLSLSFTWKALAPYSGTLAVLGTVCYVLSFSLGAGPVPALLLPEIF ASRIRAKAVALSLGMHWAANFVIGLYFLSFVNRFGISSVYLGFSGICLSAVVYIAANVVETKGRSLEEIERALNPTI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Potri.004G097800 [exp]	0	1
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Potri.001G044900 [exp]	10.77	0.8334	Pt-NRAMP1.3
					Potri.008G151550 [exp]	11.61	0.8734
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Potri.014G081200 [exp]	13.11	0.8078
					Potri.003G128400 [exp]	17.57	0.7941
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116000 [exp]	40.02	0.8270
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Potri.017G060100 [exp]	45.05	0.7866
AT4G31980			unknown protein		Potri.017G145100 [exp]	54.69	0.7777
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.018G138100 [exp]	58.63	0.8191
AT5G43820			Pentatricopeptide repeat (PPR)...		Potri.005G247200 [exp]	62.92	0.7944
AT1G29820			Magnesium transporter CorA-lik...		Potri.001G353000 [exp]	83.13	0.7887

Compare expression of checked genes

Potri.004G097800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.